DreINT0170393 @ danRer10
Intron Retention
Gene
ENSDARG00000059722 | ubac1
Description
UBA domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9372]
Coordinates
chr5:50585355-50590001:+
Coord C1 exon
chr5:50585355-50585463
Coord A exon
chr5:50585464-50589748
Coord C2 exon
chr5:50589749-50590001
Length
4285 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
ACAAAGCACTCTGTTTGCAGCAT
3' ss Score
4.77
Exon sequences
Seq C1 exon
CCATGTTAGATGAGGATGAGGAGGACCGCGTGGATGAAACGGCCCTGCAGCAGTTGACTGAGATGGGTTTCCCTGAGAGTCGTGCTGTGAAGGCTCTGCGCTTAAACCA
Seq A exon
GTAAGTACTCTCAGTGAGTTCTCGCACCCCATCTCATGCACTTCAGTATTTAGAAGTAAACATCTGCAAGGGTGCTTTCACACTGGCTTTCTTCTTCAGAGAGTGTGTGCATTAAATGTATGAAAGCTCAGTAAGGCCTTGTTCACACCTGGCATTTTTGTCAATCCGATCTCAAGTGGGAAAAGGAAACACATTACTGTTTACACATGGCGTTTTTTTTGTCCAGTTTTGGGTATTGGATGTCACTGATCTTTAGTACTGTGAAAACTAGCACAAGTTATAAAAAAATACAAATCTTATTAATAGTACTAGAACAATGATTATTCTTTATTTGCAATTTATTTATTTATTTACTATTTATTTTATTTTAATGTATTATCTTTTTTTTCTAAGCTGACACTATTTATTTGTTAATATTATTTATGTATGATATTTTTTTTATCTATTTGTTTATTTTTTGTGAATGTAAGTTTTCTAAGTAAATGTTATGTGTATACTATGTTTATAAAAACTTTATTAAAAACACAATTAAGAAAAATATAATTTTTTTAATAAAATAGGCAGCTTTATGAATTAAACAAATTTTATTTGCAGTTAATATGCCTAAACTCTTTATTCTGTTTTACAGTTTTAATATGTAAATATGCTGTTGCTTTGATAGAATATTAAAAAAATATATATTTTAGAACATAAAAGGTAATTTATTTAGGTATCCTTGAATAAAAGTATTATGCAAAAGATCACACGGAAGACTGATCACACATGCATCATAATGGATTTCTTGTATGTATGATTGACTCCTGCCTAGACACTTTACTCTGTTTTACAGAGGAAGCTAATTTCACTTGGTGAATTAAAAACATTATGCAAATAATTAGGAATTGATTACAAAACATCCAACACGTACATCATCCAAAGGTTTCAAGGCTTAATCTTGCATTCCTGAATGTTGCTTTGAAGGAACCAAGTTATTTATTATTGTAAAATGCATGTTAATAAGAGGTGCGAACAGGGCCTAAGAAACATCTGCAGTTACAACTGAACTAGTGATTTTCTGGCAAGTAAGTAAAAAAAACTACATTACCTCTGTCATAAGTCAGGAAAGCGAAAGAAAAAAATGCTTTTTTTTTTTTAAGATTTAATTTCAAGGGTTCAAAGCACCTTGCTGAAGCAAACTTTAGAGACACATTGGTAGACATTTGATGTAGAATTGATATGCTCATACTGTATATACTATATGCTTTTAGGACTGTATATTGGGGTGTTTCGTGTACCTTTTAAGGCAGCATTTCTCAATCCCAGTCCTTTAATAGGTGCTCCCCCTGCTACACATTTCACTTTTTCTCTGCGCTTGCTCTCATTAAGCTCATGCTTCACAATTTACTTGTAAGACGCTGAAGGCAATGCCACAAATACATGAATGAACGTTCTGAAGTGAAATAAGATTTTCTCATGCGCAGGTAGTGAGCAATAAGGAAGGGTCTAGGAAATGCACACTGCGTAGGGACATATCAGTGAGAACACAGTTCATGCATGGAGATGGTCATCTAAATCAGTGTTTCTTAACCGCGTTCCTGGAGGACCACCAGCTCATTTTCCTTGGCTGTTTCTCAATTCCAAGAATGCAGAGAACGGACTCGTGTTCTTGTGGAGACCGTTCTTGCCAAGTTACCTCGGTTGAATGAACTTTCTGAGACCATGAGAACAGAGAACGCTACCTCTGAGAAATGAAATGCTGCATTCTTTTTGATGGTCACATGACCTTCACGCATTCACGCAACTGGAAATTAATAAAACATTACAGCATTCGTTCATTCATTCATTTTCATTTCAGCTTAGTCCCTTTATTAATCTGGGGTCGACACAGTGGAATGAACCTCTAACTTATCCAGCACATGTTTCATGCAGCGAATGCCCTTCCAGCTGCAACCCATCATGGAATCTCATACACTCTCTTTCACACACATAAAATATGGATAATTTAGCTTACCTGATTCACCTATAGTGCATGTCTTTGGACTGTGGGGGAACATGCAAACTCCACACAGAAATGCCAACTGACCCAGCCCAGGCTCGAACCAGCAACCTTCTTCCTGTGACGCGACAGCATTACCTGCGCCACTGCATCACCTACGGAATTCATACAACGATTTCTTGTTTTCCCCCTTTTGAATATATATAACATGCACAAAACGCATCCTCGATATCAAGAACACATTCAGGAACTTTCGCGTGTCCTCTGTTCTTGCGGTCTTGGGTTTTGTAACTGAACTTTTGCGGTTGATGATGACGTTACACAAGAACACAAGGATGCAAGATAGGTGAACAACGCATATTGAGAAACAGCCAGTGTTTCTCACCCACAATTCTGTAGGACTATTAGCTTGTTTTTCTTGTCTTCTTAACCAAACACACCAGTTTCACATCATCAGCTCATTAGCAGAGACTGAAAGATTTGTAATGGGTGTGACAGACAAAGGAGACATCCAAAGTATGCAGTGTTGCAGGCCCCATAGATTTCCATTCATACGATGCGAATGTGTCAGACTGAAAATGCAAGTTCGTGCAACTAGTTTCGTAGTTTGCTGCATTGCAAAGTTTAAGCTTGGTTAACTCTAACCTGGGAAATTGCATCACGTGACTGTGCAAGACCAATCAAAGATCAAAACATGACCTCTCTGGACAGATATGTAAAATATGAACAAATCTCTCGCTTTTCTAAATGTCTAATCATCTTGTTTAATCTCGCAGCTTTTCGCAGCGCTGTACTACAAAATTCACATGCTTAAACTCAAGTGTGACCGCGGTATAACGCTAATCTAAATCAGCTTTGTTAAATAGGAGAGACATGCAAAATATGTAGAGGAGGAGGGCGTAAGAACGGGGATTGAGAAATGCTGCGTTAAGGCATGATATGAAAACATGCTAAATTATTATATAGATCAAAGATTTTCAATCAGTGGGCCTCAGCGATCCTGCAGGTGGACTGTGAGATGGCTTAAAATTACCTTTAATATTGTACTATAATTATTTGATGTCATTATTAAACGTCATATTAAAAATAAAATAGTAATGGCATTTCCTGTTTTCTGTGATTGAGCAGACTAATTTGGACTGTGCAAAAACAGCCTCACTGTGAAAAAACTGTGGCTTAAATTTCCAACCGCTGCGCGTCAAATGGGACTATGTTCTCAGTTGTATAAAGCAAACAGTTATGCAAATGTAAAGGTAATGTTGTTTTATAATAAGCAGCTCACGCTTGCCTCACGTCTGCAACTCATACTGTATCAGAGTCACACAAGTCTCCTGATTCACAAACTATGTATTTTTTCTTTGTGTGAACACTTTAAAACATCCTCATAGTTGTCCAAATTAACATCTTGCGAGCGTTTTATAACTAAAGTGAGTCCGTACAGGAGGATCTAGCAACAATCTGTGGTGTTTCATTTATGAACAGCCGTTCACCTTTCCTGTCAGCGAACTCTAATAATGTCCAGCTACAAACTAAACCACCATCAGATCGATTTTTTTCAACATATTTAGATGGTTGTTTCTTTATTTTACATTTAGGGTTGGGGTTAAGTGGATATAAATCAATAGATGAAGAAAAGGCCCAAATACTCTGCAGCTTTAAAGAATAACTGAAGGAAAGAATTCAGGAGCTTTGAACCTGTCTGTGTGTTTTTAAAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATTCTTATATATATATATATATATATATAACTTTATATATATACATATATACATAAAAAAATGTTGAAAAACTAGGGAGTAATAGAGGGCAAAATAAATGTTTTGCTAATAAATAAAGCTTTAAAATAAGCATTTTCTCTAGACCAGGCATGTCCAAACATGGTCCTGGAGGGCCGGTGTGCTGCAAAGTTTAGTTCCAACCCCAATCAGACACACCTGGGCTAGCTTATCAAGCTCTTACTAGGCTTTCTACTCTAAAAACATCCTTGCAGGTGTGTCAAGGCAAGTTTGAGCTAAAATCTGCAGGACACCGGCCCTCCAGGACAGAGTTTGGTCACCCCTGCTCTAGACAATCAGTTTGGGTCTTCAAAAATTTTTCAGAGAAAAAGGTGGGCCTCGAAGTGAAAAAGGTTGAGAACCACAATCTAGATAACAACAGATAAATGAACAAAAAAGATGGTTTTGTGGGTTATGAACTGTAAAAAATCTCAGCTCTCGTTGGGTTAAATAAAAGCCACTAATAACAAAGCACTCTGTTTGCAG
Seq C2 exon
CATGTCTGTGACCCAGGCTATGGAATGGCTGATTGAGCATGTTGATGACCCCATGGTTGATGCGCCTCTACCAGGACAGGAGAGTCCAGGGGCAGCCGCCGCTGCAGCGCCTGCTCCAGGAGCCTCTGCCACAGCTTTAGCAGCCCGTGCTCGTTTGATCTCCCAGGCCAGCATAGACGAGGCCAAACAGGATGAACTGACAGAGATCTTTAAAAGGATCAGAAGAAAAAGAGAGTTCAGACCAGACTCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059722:ENSDART00000138210:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.554 A=NA C2=0.259
Domain overlap (PFAM):
C1:
PF0062726=UBA=PU(70.3=70.3)
A:
NA
C2:
PF0062726=UBA=PD(27.0=11.8),PF065696=DUF1128=PU(81.4=41.2),PF0062726=UBA=PU(8.1=3.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]