RnoINT0159049 @ rn6
Intron Retention
Gene
ENSRNOG00000017983 | Ubac1
Description
UBA domain containing 1 [Source:RGD Symbol;Acc:1359542]
Coordinates
chr3:3462411-3463654:-
Coord C1 exon
chr3:3463546-3463654
Coord A exon
chr3:3462646-3463545
Coord C2 exon
chr3:3462411-3462645
Length
900 bp
Sequences
Splice sites
5' ss Seq
CCAGTATGC
5' ss Score
2.6
3' ss Seq
AGACTCTTGTCCTCTCCCAGCAT
3' ss Score
5.5
Exon sequences
Seq C1 exon
CTATGTTGGATGAAGACGAGGATGAGCGAGTGGATGAGACCGCCTTGCGGCAGCTCACAGAGATGGGCTTTCCTGAGAGCAGAGCCTCAAAGGCCCTTCGGCTGAACCA
Seq A exon
GTATGCTTTCTTTCCTCTTTGCCTGGGCTTCCCTGGGCTTCCCTGCCATTCTCCTTCTGATCTCTGGTCATTCTTTCTTTCTTTAAGATTTATTTAAAATTTTTTATTTATCTGTGTTTATGAACATACGTGTGTGGGTGCCAGAGAAGAAGTTGGATCTTCTGGGGCTAGAGTGACAGACCGTTGTGAACTGCCTGACATAGGTGCTGGGAACCAAACTCAGGAGCTCCTCATTTTACTTTCTGAGCCAGCTCTCCAACCCGGTCGAGTCATTTCTAACTGTGTTTTAGTAGAGGCACCTTATTGTTGTGCTCCAGAAGTGCTTTCATGTATGGTCTTTTTGGGATGTGTGGGTGTGTGTGTGTGTGCATGCTTGGATTGAGGGTCTCTGTTACCTATGCTGGTCTCGAACTCCTGCACTTATGCAGTCCTCCTGCCTTAGGCTCCTGAGTAGCTAAGACTATAATACCTGGCTGTTAGGAGGGTTAAAAATCAGCCTGTAAGTGTGCCCTGCACTCTCAAGTTAGGAGAGCTCTGAGCCAGACCTGCCTCTGGCCAGACAGGGGTTCTTAACAGTCTTCTTGCTCTTCTGGTTTTAATACTCACTCAGATCCCATATGAAGACTGTAGACCAGAGCTAGTCAACAGCAGTGTTCTTTGTGCTGTGCACTTAGGACCTGCACTCCCTTCTCTCTTGTGTTTGGGGCATGTGTCTCTGCTTGTTCTATTGGGTATTGGGTGTTTGAGGTGAGAGCTTTGTGGAGGTTTCATCCCAAGAGATCATCTGCCACCATTGCTGCTGCTGGTCTTGCTATGTCACTGAAATATGTTGGAGTACAGAGGATAGGAACGTTTCTAGTAACTCCTGGAGGAGTTAAGAAGACTCTTGTCCTCTCCCAG
Seq C2 exon
CATGTCGGTGCCTCAGGCCATGGAGTGGCTGATTGAACATTCGGAAGATCCAGCTATTGACACACCTCTCCCAGGCCATGCCGCCCAAGCGGAGGCGAGTGCTGCAGCTGCCACCTCCTCCTCCTCCTCTGAAGCTGCCGTGGGAACTAGTGTTGAAGATGAGGAGTCCCGGGATGAGCTCACAGAAATCTTCAAGAAGATACGCAGGAAAAAGGAATTCCGAGCCGATGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017983:ENSRNOT00000024352:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.703 A=NA C2=0.665
Domain overlap (PFAM):
C1:
PF0062726=UBA=PU(70.3=70.3)
A:
NA
C2:
PF0062726=UBA=PD(27.0=12.7),PF0062726=UBA=PU(8.1=3.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGAAGACGAGGATGAGC
R:
GCATCGGCTCGGAATTCCTTT
Band lengths:
334-1234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]