BtaINT0156601 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020296 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:26482345-26482591:-
Coord C1 exon
chr2:26482526-26482591
Coord A exon
chr2:26482435-26482525
Coord C2 exon
chr2:26482345-26482434
Length
91 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TTTTTTATAACAATTTTTAGGCT
3' ss Score
6.8
Exon sequences
Seq C1 exon
CCAGCACCTAACCAAGTTACTTTTCATCTGCCACTACATCGTTATTATGCTATGTTTTTGAGTAAG
Seq A exon
GTAAAAGTTTTCATTAAATACTCTGTTCATCTGTTTTTGAACATTGGGAAATATGTATTCAATTAGTAACTTTTTTTATAACAATTTTTAG
Seq C2 exon
GCTGTGAAATGTCAAGAACTAGATTTGGATTCTGTTTTACCAGATCAGGAAATGTTAATGAAACTAATGATTCACCCACTCCAAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020296:ENSBTAT00000061386:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCACCTAACCAAGTTACT
R:
CTGAATTTGGAGTGGGTGAATCA
Band lengths:
156-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]