GgaINT0046791 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:20001019-20001259:-
Coord C1 exon
chr7:20001198-20001259
Coord A exon
chr7:20001109-20001197
Coord C2 exon
chr7:20001019-20001108
Length
89 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
GTACTTGCTTCTGTTTCTAGGCT
3' ss Score
9.31
Exon sequences
Seq C1 exon
CTCCTAACCAGGTTACTTTTCATTTGCCACTGCACCGTTACTTTGCCATGTTTTTAAGTAAG
Seq A exon
GTAAGCATGTGTTTTCAGTTGCACAGAAGATGGAAATTCTGTGTTGAGTGTGATTGTTTGGTACAATATGTACTTGCTTCTGTTTCTAG
Seq C2 exon
GCTGTCAAGTGCCAAGAACTAGATCTGGATACTATCTTGCCAGATCAGGAGATGCTGATGAAACTAATGATTCATCCACTTCAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009671:ENSGALT00000038533:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAACCAGGTTACTTTTCATTTGC
R:
CTGGATCTGAAGTGGATGAATCA
Band lengths:
151-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]