BtaINT0156627 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020296 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:26364060-26366408:-
Coord C1 exon
chr2:26366229-26366408
Coord A exon
chr2:26364270-26366228
Coord C2 exon
chr2:26364060-26364269
Length
1959 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TATTTTGAATAATGTTTTAGGCG
3' ss Score
5.58
Exon sequences
Seq C1 exon
GAAGAAGAAGAATTTTCAGTTCTTTCCAGCTGCCTGGGACTTCTGCCAACATTCTACCAAACAGAACATCCATTCATCAGTGCCTCCTGTCTGGATTGGCCAGTTCCGGCATTTGATATTATATCTCAGTGGTGTTTTGAGATAAATTCATTTACTGAAAGACATGCTGAACAAGGAAAG
Seq A exon
GTATGTAAAAAGAGATACACTCGCTATAGTGGTGATATGCCAATAGGTAAGAGAATACTTAATTCATACTTCTAATGGTCTAGGGAACCTAGAATGGTCAAAGACATTTAGTTTTTAATTCAGTAGAACAGTTAAGATGTCCCTTGATGGAGGATAGGACACGGTTTCCTTCTGACAGTACTAAAACCACAGAAGAATCTAGAATATCAGGGAAACAAAAATTAAAAACCAAAATCTTAGGTCTAATTATGAGAGATGGCACTCCCTGGTTCCCAAATCTGTGTATTCCATCTATAAGGGAGCAGTCACCCTTATGTACTGGTGCTTGTTTAGCTCATATACCTCATTCTGTAGGACCATATACCTCATTCTATAGGTGTTTTCTTCTAGTTGGTACCATCTAAAAATTCATCAGCAAAGAAGTTGATTATTTAAAAGACCAGTGAGTTTTTCAGATGATTGACTACCAGTTAAGATCAATTAATTCATAGACATCCACCTCTTGCCTTACATCTTTCTGTATGAAGAAAATCCTTTGACTAGAGACCATGTGGTGTATGCTGCTGGGCAGTTTACAACCTAATCTAGGTAAGTATCAAGGTCAGTGAGGACAACTTGCTGTTCTTTCCACTGATGCAAGGGTTCCATATTTAATCAGCTCATCACAGAATATGCAGTCTTTGGAGTCAAGAGCTGGGCACTGAGTATGACAAATGCATATTGTAAACACATATGTTGTCCTTATCCTTGCTTCCATGGCCACTTTATCCATGAACTTACTGATAAACACCAAGCTGGATAATTGGGTATTGCATTGATTAAGATGTATTGTGGCTGTTAGTACTGTGAGAAGATCACCAGGTAAACTGCCAACCTGTATACAGTTTCTTAAAATATAGATTCATACTACATTTTATCTGTTTTAAGTGTTAAGGAAGTAGCATTTAGAAAAAACATAAATGCTATTTCCAGTATTTTTATATAACTACAAGAACAAAATATCCTATAGGGAAATTTAACTGATTTTTTTTTCATACTTCCTGACAACATTTATGAAAAGAATTGTAGCCCTAGCACTGACAGATAACAAAAGCTCTCAACAGCTTGAGGTGTAAGATTTTTCATCTTCTAGAAAAGAAACTCCAGATGATAAAGTACTGAAATAGAAATGTAAATTATAACCATGATCTTCCCCAAAAGAAAAAGCCAGTGAATTGTTTGATCACACTCGGGTCTCCTGCACGGCAGGCAGATTCTTTACCATTTGAGCCACCAAATGTCCTTTTGCTTATCTAAGAAAGGTCCAAAACTTAGTTTTGAAAAACGTGTAACTGTTTAAAATTATGCATCAAGAATATGAAAAAAAAATACATCTGCATATATTTTCCTTGCATCCTTAGTTATATTTCATATTTTTCTTTTAAAGTAATAAGAAATTTAAATCTTTGAGGGTGCTTAATCTAAAATTTACATCATGTAGTAATTGAAAAAGCGTGAAAGTTTTAGTTGCTCAGTCGTGTCTCACTCTTTGCGACCCACGGACTGTAGCCCGCCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAAGACTGGAGTGGGTAGCCATTCACTTCTCTTCTCCAGGGTATCTTTCCGACCCAGGGATCAAACCCACATCTCTTTATGTCTCCTGCATTGGCAGACGGGTTCTTTACCCCTGGTGCCACAAAGGGACTTAAATTAAAATAGAGAATGATAATTCTTTTTTTTTTTTTTTTTTTGAGAATGGTAATTCTTGAAGGACTATTTTAGTCTTTTGTGAAATGGAAATGGCAAGAGTGTTTATAAAGAAAAAAAAAGCCACATTCTTGGAGACAGATTTCTTAAAAAAAAAAAGAAAACAGCCTTTAAAAAACAAATATTTTGTATAAGTAACTTAAATACATAGGACTAATGAATATTTTGAATAATGTTTTAG
Seq C2 exon
GCGTTGCTTATCCAAGAGTCAAAATGGAAATTGCCACACCTTCTACAGTTGCCTGAAAATTATAACACCATTTTCCAGTACTACCACAGAAAAACCTGTAGTGTCTGCACCAAGGTTCCTAAAGACCCTGCCGTTTGCCTTGTTTGTGGTACTTTTGTATGCCTGAAAGGACTTTGCTGCAAGCAACAAAGTTACTGTGAATGTGTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020296:ENSBTAT00000061386:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTTCTTTCCAGCTGCCTG
R:
GCAGCAAAGTCCTTTCAGGCA
Band lengths:
345-2304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]