DreINT0170989 @ danRer10
Intron Retention
Gene
ENSDARG00000042508 | ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1473]
Coordinates
chr9:3931759-3934544:-
Coord C1 exon
chr9:3934368-3934544
Coord A exon
chr9:3931969-3934367
Coord C2 exon
chr9:3931759-3931968
Length
2399 bp
Sequences
Splice sites
5' ss Seq
GCGGTCAGT
5' ss Score
6.52
3' ss Seq
AACATGTGGTGTCTCCTCAGTCT
3' ss Score
6.57
Exon sequences
Seq C1 exon
GTGGAGGAGGAGTTCTCTCTGCTGACGCGCTGTCTGGGTTTAGCTGCTTCTGTTCAGTGCAGTGGATCCATGAGCAGCGCAGCGTGTCTGGAGTGGAACATCAGTGCTTTTGACTTGATCAGTCAGTGGTGCTCAGAAGTCGTCGCTCTGTCCGACACGCCCTCCCAGCAGTCTGCG
Seq A exon
GTCAGTATCTGCTGCTCCTCCTAGAGCGAGAGCCCATAAATATAACGCATTAATGTTTAATATAATATAATATTGATGAAATATTTGAAAAAATATTCTTAAGATATTTGAAAAGGCTTTACAAAAAAAAGGACTTGATTTAACAATGTTAAGGCCTGTGCACACTGAGACGTTTTTGCCTTGTGTTTTACCTCGACGTTTAACGCCTCGTGACTAAACAAAGAGCGTCAATGTGATCGTGCCTTTAAAAAAAAAAAATGCTTCATGCACGGTTTTGTTTTGACGCGCCGTGTTAAATCTTCTCCATCAATCAGATCGGCACTTTTGTTCACGTGCACGGAGCTGCTGAAGTAACAGTAAACAGCACTTGGAGGCGCTCAAGCGCATAATTGTCAATGCGAGCGCACATTGAAGAAGATGCCCAGAGGCGATATGAACGTGGAGCTGCTTATTGCTCTGGTGAACAATAATCATTTCATCATTGCTAGAGCTGGAGCTGCTGCTTGAACCATCCATGCTTGTTCGAGTCACCAGCAACTTTAACAACATGCGTGTGAACTTCCTCTCCTCCTCTTCTACTGTGTTATAAGCGGGTGTCAGAAGCTTAAAGTTGTGTAGCGCCATCTATCGTCAAAGAGTGATTTTGGATGTCTGAACTTTCTGAAATGGTTTTTTGAAAAACACATACACAACCACACAGACCCTTCCAAAAAATGACCGCAAGCAAAACATTATGGAGTGGAATGCAAGGGATGATTTGAGGGTTTAATAAAATGGCCAGCTGTTCCCGTTCAGCAGATATCACCATGGTCAATGCTTTAAAGGGTCACGAAACACCAAAACACATGTTTTGAGCGGTTGACAGTTGTAAATGTGTGCCACACTGCTAAAAACAGTATTAGGATACGTATATTTCACTAAAAAGTGAAAATTGGTTGTTTTTGCGTTATTTCAAGCTAATTCTTTCCAGTTTAAAATGAATTTTTGAAGCTGTGTCACGGCCATGAGATCTTAGTGTGTATTCCAGCGTGTAGACTGGACGTCTGTACCCAGGAGTACCTTATGACGTCTCGGAGTGTGCTGCATTCAATCATGAGATAGAATTCAAACCAATCAGCACACTCTATTGTGTATGCGGTGCAACTTCATTAATATGCATGATAGCTTCCAAGACTGTTTTTAGCTGTTACAGTGTTCAGACGGCAGAGAGACGCCACGTTGTGTTGCCAAGTGGCAGAACAAGAATTGTTTGGAGATGCAGGTCGTCAGTGTTGCTTTTATAATTTGCTGCAGTGAAGGTTTTATTTTCATTTTCCCTCTATGAGAGCGCAGCTGGACTCAGTGCATGGATTACAGTGCATGCAACGCTCGACAGAAATACCTGTCTAAGGAACTTTGTTTTACCTGAGAGCTTTTCCTCATATGGAAACAGTGAAATCCAGATTTGCTGCTCGTCTCATTTTAATAAAGACGCAGCTCCAGTTGGTGTTGATTGACCTGACCTACAGTTTTGGATCAGTGGTCTTTGTTTGTTTATTCAGAGGCAAAGTTAGTTGCTATGGTCAGCAGTACTCTTTCAGTGTTTAAAGACGGACATTGGTCAAATGATTTTCAAGTTAATAAAGTTTACCATACGTTAACATCATTACAATGTTATGGACTGAAAGATCTGTAAATGCTGCTCTCCGAGTGTAAACATGTTAGCACCACAATCAAATTTACCGTCATGGAGGATTTTCGCTGATTTTTGTGACAGGAATAACACACACACGGCTTTCTGACGCTACCTACCGTGTGCATTTAAGTTACAGAGAAATGCGGAGGGTTTTTTTTTTCTCTCATTCGCCGTGCGGTAACAAACATTGCATGAAAAATACACGCTTCCTGCAATTCCTCGAATTTAATAACTCGTTTGTCATGAGGGGCATGAAGGAAATTACTGAATGAAAGAGCCAAACTGCAGTTAAAGTCCACTATTTAATAATTTGGCAAACAATTTGATTACTTATGTCCATGTAAACACAGTCTCTGTCTTGCTCCCCTGCGTCTGTGTGTTTATTTTGCCTCTGAAAATTGTGTGTGCCCTAATCGACTGCAAATTTTTACACACCTTCCCTTATTCCCTCCTCCGACACTCCCCCCTAAACAGAGCTGGACACGCCCACTTTCCTGACTTTTTCCATAGTAGAGGTGTGAAAAACCCCTGCTGAAACTGGGGGTTTCATGGCCCTCTAAGGTGGCTTTTTGTCTCATTTCTAGTCCAAATATCAACAATTTTTTTTTATCAATGCTAGATGGACAGGAATGCAGGATTTCATCTTCAAGTTTTTTGCACATAATACAGCTGATGAAGTGAAACTGTTGAATATAGTGTAATTGAACATGTGGTGTCTCCTCAG
Seq C2 exon
TCTCTGTTAGGTCAGGACCCGCAGTGGGCTGCTCCTCGTCTCCTGCAGCTTCCCGACAATTACAACACCATCTTCCAGTACTACCACAGGAAATCCTGCAGCAGCTGCGGAAAGACCCCCAAAGACCCTGCGCTGTGCCTGGTGTGCGGCGCGTTCGTCTGCCTGAAGGGTCATTGCTGTAAGCAGCAGGGCGTCTGCGAGTGTGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042508:ENSDART00000129091:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]