BtaINT0157540 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014897 | UNC5A
Description
unc-5 homolog A (C. elegans) [Source:HGNC Symbol;Acc:HGNC:12567]
Coordinates
chr7:39689979-39690562:+
Coord C1 exon
chr7:39689979-39690147
Coord A exon
chr7:39690148-39690328
Coord C2 exon
chr7:39690329-39690562
Length
181 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CCGTCGGGCCCTGCCCACAGGAC
3' ss Score
9.77
Exon sequences
Seq C1 exon
GTTGCCCCTAGCTGGCTGTCAGACCCTGCTGAGTCCCATCGTTAGCTGTGGGCCCCCTGGAGTCCTGCTCACGCGGCCCGTCATCCTCACCATGGACCACTGTGGGGAGCCCAGCCCCGAGAGCTGGAGCCTGCGCCTCAAAAAGCAGTCCTGCGAAGGCAGCTGGGAG
Seq A exon
GTGAGCCGGAAGCCTCCCCCATCCCCCCAGGCTCGGTGGAGTCCACCTTCCTGCCTGGCCCCTGGGCCCTGCGCCCTCCCCAGTCTCTGGCCACTCCTTAGAGGCAGCTGGCCGGGAGGTTACCCACCGGGTCCTCAGGCTGCAGCTGGCCACGACCTGACCCGTCGGGCCCTGCCCACAG
Seq C2 exon
GACGTGCTGCACCTGGGTGAGGAGGCACCCTGTCACCTCTACTACTGCCAGCTAGAGGCCGGCGCCTGCTACGTCTTCACGGAGCAGCTGGGCCGCTTCGCCCTGGTGGGAGAGGCCCTCAGCGTGGCTGCCGCCAAGCGCCTCAAGCTGCTTCTGTTCGCCCCAGTGGCCTGCACCTCACTCGAGTACAACATCCGAGTCTACTGCCTACACGACACCCACGACGCACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014897:ENSBTAT00000043831:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PD(50.5=91.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCACCATGGACCACTGT
R:
CGAACAGAAGCAGCTTGAGGC
Band lengths:
247-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]