HsaINT0177847 @ hg38
Intron Retention
Gene
ENSG00000113763 | UNC5A
Description
unc-5 netrin receptor A [Source:HGNC Symbol;Acc:HGNC:12567]
Coordinates
chr5:176877535-176878127:+
Coord C1 exon
chr5:176877535-176877703
Coord A exon
chr5:176877704-176877893
Coord C2 exon
chr5:176877894-176878127
Length
190 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CCACTGACCCCTGCCCACAGGAT
3' ss Score
9.84
Exon sequences
Seq C1 exon
GTTGCCCCTAGCTGGCTGTCAGACCCTGCTGAGTCCCATCGTTAGCTGTGGACCCCCTGGCGTCCTGCTCACCCGGCCAGTCATCCTGGCTATGGACCACTGTGGGGAGCCCAGCCCTGACAGCTGGAGCCTGCGCCTCAAAAAGCAGTCGTGCGAGGGCAGCTGGGAG
Seq A exon
GTGAGCAGGGAACTGACCCGGGCTCCAGAAGGGAACGTGGGCTAACTGCACGCTCCACCCGGCCTTCCACCGCTGGGTGGTCCTGAGCCGCACCCCCACCCCTCCCCAGTCTCCGGCCACTTCTTGAAGCCACAGCTGGCCCTAGGGCTCTGAGGCTGGGCCGAATTGACCCACTGACCCCTGCCCACAG
Seq C2 exon
GATGTGCTGCACCTGGGCGAGGAGGCGCCCTCCCACCTCTACTACTGCCAGCTGGAGGCCAGTGCCTGCTACGTCTTCACCGAGCAGCTGGGCCGCTTTGCCCTGGTGGGAGAGGCCCTCAGCGTGGCTGCCGCCAAGCGCCTCAAGCTGCTTCTGTTTGCGCCGGTGGCCTGCACCTCCCTCGAGTACAACATCCGGGTCTACTGCCTGCATGACACCCACGATGCACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113763:ENST00000329542:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PD(50.5=91.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGGCTATGGACCACTGT
R:
CGCAAACAGAAGCAGCTTGAG
Band lengths:
249-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains