GgaINT1029318 @ galGal4
Intron Retention
Gene
ENSGALG00000018998 | UNC5A
Description
unc-5 netrin receptor A [Source:HGNC Symbol;Acc:HGNC:12567]
Coordinates
chr13:9654368-9654853:-
Coord C1 exon
chr13:9654685-9654853
Coord A exon
chr13:9654602-9654684
Coord C2 exon
chr13:9654368-9654601
Length
83 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GGCGCGTCTCGGTGCCGCAGGAT
3' ss Score
6.5
Exon sequences
Seq C1 exon
GCTGCCCCTCGCCGGCTGCCAGACGCTGCTGAGCCCCATCGTCAGCTGCGGCCCCCCCGGCGTGCTGCTCACCCGCCCCGCCATCCTGGCCATGGGGCACTGCGTGGAGGCGGGCGCTGAGCACTGGAGCCTGCGGCTGAAGAAGCAGTCGTGCGAGGGGACGTGGGAG
Seq A exon
GTGAGCACCCACCGGGGCGGGGGTCCCCGCTAGGGGGGAACAAGGGGGTCTCCGCGCTCACGTGGCGCGTCTCGGTGCCGCAG
Seq C2 exon
GATGTGCTGCAGCTGGGCGCCGAGCCGCGCACCGAGCTGTACTACTGCCAGCTGGAGGCACAGGCGTGCTACATCTTCACGGAGCAGCTGGGCCGCTTCGCACTGGTGGGCGAGTCGCTCAGCATGGCGGCCTCCAAGCGCCTCAAGCTGGTCCTCTTTGCGCCCACCGCCTGCCCCTCGCTCGAGTACAACATCCGCGTCTACTGCCTCAGCGACACGCAGGACGCGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018998:ENSGALT00000029975:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PD(50.5=91.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGGGCACTGCGTGGA
R:
GCTGCTCCGTGAAGATGTAGC
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]