RnoINT0160585 @ rn6
Intron Retention
Gene
ENSRNOG00000059840 | Unc5a
Description
unc-5 netrin receptor A [Source:RGD Symbol;Acc:621755]
Coordinates
chr17:10155509-10156078:-
Coord C1 exon
chr17:10155910-10156078
Coord A exon
chr17:10155743-10155909
Coord C2 exon
chr17:10155509-10155742
Length
167 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CCATGAGGCCCCGCCCACAGGAT
3' ss Score
5.19
Exon sequences
Seq C1 exon
GTTGCCCCTAGCTGGCTGTCAGACCCTGCTGAGTCCAGTCGTTAGCTGTGGGCCCCCAGGAGTCCTGCTCACCCGGCCAGTCATCCTTGCAATGGACCACTGTGGAGAGCCCAGCCCTGACAGCTGGAGTCTGCGCCTCAAAAAGCAGTCCTGCGAGGGCAGTTGGGAG
Seq A exon
GTAGGTAGGGGAAGAGCATCCGAGGCCACCCAACCAAAACACTGGCCCACAGTGGGCATGGCGGAGTCTCCCTAAAACCCTGGCCGCTTCTTAGAGCTGAGGGTGGCCTGAAGACTCTGGGGACTCACAAGTTGGTTAGGAACTGACCCATGAGGCCCCGCCCACAG
Seq C2 exon
GATGTGCTGCACCTTGGTGAGGAGTCACCTTCCCACCTCTACTACTGCCAGCTGGAGGCCGGGGCCTGCTATGTCTTCACGGAGCAGCTGGGCCGCTTTGCCCTGGTAGGAGAGGCCCTCAGCGTGGCTGCCACCAAGCGCCTCAGGCTCCTTCTGTTTGCTCCCGTGGCCTGTACGTCCCTTGAGTACAACATCCGAGTGTACTGCCTACACGACACCCACGACGCTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059840:ENSRNOT00000087397:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PD(50.5=91.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTCATCCTTGCAATGGA
R:
GCAAACAGAAGGAGCCTGAGG
Band lengths:
255-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]