BtaINT0157541 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014897 | UNC5A
Description
unc-5 homolog A (C. elegans) [Source:HGNC Symbol;Acc:HGNC:12567]
Coordinates
chr7:39690329-39690821:+
Coord C1 exon
chr7:39690329-39690562
Coord A exon
chr7:39690563-39690671
Coord C2 exon
chr7:39690672-39690821
Length
109 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
TGACACCTGGGGCACTGCAGGAG
3' ss Score
2.6
Exon sequences
Seq C1 exon
GACGTGCTGCACCTGGGTGAGGAGGCACCCTGTCACCTCTACTACTGCCAGCTAGAGGCCGGCGCCTGCTACGTCTTCACGGAGCAGCTGGGCCGCTTCGCCCTGGTGGGAGAGGCCCTCAGCGTGGCTGCCGCCAAGCGCCTCAAGCTGCTTCTGTTCGCCCCAGTGGCCTGCACCTCACTCGAGTACAACATCCGAGTCTACTGCCTACACGACACCCACGACGCACTCAAG
Seq A exon
GTACCTGCCACACAGAGGCTGGGCCGGAGGGCTGACCGCCCCTGGCCCTGGGAGGGGGGCAGTAGAGAGGGCGCCCCTGTGGGCTTGGCTGACACCTGGGGCACTGCAG
Seq C2 exon
GAGGTGGTACAGCTGGAGAAACAACTGGGAGGACAGCTGATCCAGGAGCCCCGCGTCCTGCACTTCAAGGATAGCTACCACAACCTGCGCTTGTCCATCCACGATGTGCCCAGCTCCCTGTGGAAGAGCAAGCTCCTCGTCAGCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014897:ENSBTAT00000043831:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCCTGTCACCTCTACTA
R:
ATCAGCTGTCCTCCCAGTTGT
Band lengths:
252-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]