HsaINT0177848 @ hg19
Intron Retention
Gene
ENSG00000113763 | UNC5A
Description
unc-5 homolog A (C. elegans) [Source:HGNC Symbol;Acc:12567]
Coordinates
chr5:176304895-176305394:+
Coord C1 exon
chr5:176304895-176305128
Coord A exon
chr5:176305129-176305244
Coord C2 exon
chr5:176305245-176305394
Length
116 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
GACCACCTGGGGCACTGCAGGAG
3' ss Score
2.36
Exon sequences
Seq C1 exon
GATGTGCTGCACCTGGGCGAGGAGGCGCCCTCCCACCTCTACTACTGCCAGCTGGAGGCCAGTGCCTGCTACGTCTTCACCGAGCAGCTGGGCCGCTTTGCCCTGGTGGGAGAGGCCCTCAGCGTGGCTGCCGCCAAGCGCCTCAAGCTGCTTCTGTTTGCGCCGGTGGCCTGCACCTCCCTCGAGTACAACATCCGGGTCTACTGCCTGCATGACACCCACGATGCACTCAAG
Seq A exon
GTATCTCCCGCCCCTCACCCCCCGCCGCTGGGAGGCCGAGCTATGCCTGGCCCTGTGGACTGCCTGCCTTGGGCGCAGTGGGGAGGGGCCTGGGCTGACCACCTGGGGCACTGCAG
Seq C2 exon
GAGGTGGTGCAGCTGGAGAAGCAGCTGGGGGGACAGCTGATCCAGGAGCCACGGGTCCTGCACTTCAAGGACAGTTACCACAACCTGCGCCTATCCATCCACGATGTGCCCAGCTCCCTGTGGAAGAGTAAGCTCCTTGTCAGCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113763-UNC5A:NM_133369:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCCTGCTACGTCTTCAC
R:
CTGTCCTTGAAGTGCAGGACC
Band lengths:
249-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)