RnoINT0160586 @ rn6
Intron Retention
Gene
ENSRNOG00000059840 | Unc5a
Description
unc-5 netrin receptor A [Source:RGD Symbol;Acc:621755]
Coordinates
chr17:10155233-10155742:-
Coord C1 exon
chr17:10155509-10155742
Coord A exon
chr17:10155383-10155508
Coord C2 exon
chr17:10155233-10155382
Length
126 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TACCACCCCGGGCACTGCAGGAG
3' ss Score
2.59
Exon sequences
Seq C1 exon
GATGTGCTGCACCTTGGTGAGGAGTCACCTTCCCACCTCTACTACTGCCAGCTGGAGGCCGGGGCCTGCTATGTCTTCACGGAGCAGCTGGGCCGCTTTGCCCTGGTAGGAGAGGCCCTCAGCGTGGCTGCCACCAAGCGCCTCAGGCTCCTTCTGTTTGCTCCCGTGGCCTGTACGTCCCTTGAGTACAACATCCGAGTGTACTGCCTACACGACACCCACGACGCTCTCAAG
Seq A exon
GTACTGCCACACACAGCCCTGTGGGCAGACCACCCAGCCCTAAGCATCCACCTGCCTCGTCCCAGGGGGGCAACAGGGAGGGTTACTCCTACTGTCAGGCCTTGCTTACCACCCCGGGCACTGCAG
Seq C2 exon
GAGGTGGTGCAGCTGGAGAAGCAGCTAGGTGGACAGCTGATCCAGGAGCCTCGCGTCCTGCACTTCAAAGACAGTTACCACAACCTACGTCTCTCCATCCACGACGTGCCCAGCTCCCTGTGGAAGAGCAAGCTACTTGTCAGCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059840:ENSRNOT00000087397:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTACTACTGCCAGCTGG
R:
CCTGGATCAGCTGTCCACCTA
Band lengths:
246-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]