GgaINT1029319 @ galGal4
Intron Retention
Gene
ENSGALG00000018998 | UNC5A
Description
unc-5 netrin receptor A [Source:HGNC Symbol;Acc:HGNC:12567]
Coordinates
chr13:9654052-9654601:-
Coord C1 exon
chr13:9654368-9654601
Coord A exon
chr13:9654202-9654367
Coord C2 exon
chr13:9654052-9654201
Length
166 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTG
5' ss Score
7.76
3' ss Seq
NNNNNNNTCTGTGCGCACAGGAG
3' ss Score
0
Exon sequences
Seq C1 exon
GATGTGCTGCAGCTGGGCGCCGAGCCGCGCACCGAGCTGTACTACTGCCAGCTGGAGGCACAGGCGTGCTACATCTTCACGGAGCAGCTGGGCCGCTTCGCACTGGTGGGCGAGTCGCTCAGCATGGCGGCCTCCAAGCGCCTCAAGCTGGTCCTCTTTGCGCCCACCGCCTGCCCCTCGCTCGAGTACAACATCCGCGTCTACTGCCTCAGCGACACGCAGGACGCGCTGAAG
Seq A exon
GTATTGGGGTGCTATGGAGGGGGTGTCTGCCCCCCACCCCGCCCCGCCCGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGTGCGCACAG
Seq C2 exon
GAGGTGATGCAGCTGGAGAAGCAGATGGGGGGGCAGCTGATCGGGGCTCCCCGCGTGCTGCATTTCAAGGACAGCTACCACAACCTGCGGCTCTCCATCCACGACATGCCCAGCTCCCTCTGGAAGAGCAAGCTGCTTGCCAGCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018998:ENSGALT00000029975:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCGTGCTACATCTTCAC
R:
AGCTGTCCTTGAAATGCAGCA
Band lengths:
251-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]