BtaINT0157561 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014270 | UNC5B
Description
Bos taurus unc-5 homolog B (C. elegans) (UNC5B), mRNA. [Source:RefSeq mRNA;Acc:NM_001099029]
Coordinates
chr28:27578439-27585559:+
Coord C1 exon
chr28:27578439-27578663
Coord A exon
chr28:27578664-27585415
Coord C2 exon
chr28:27585416-27585559
Length
6752 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
AATCTCTCTCCTCCTCCCAGGCC
3' ss Score
9.91
Exon sequences
Seq C1 exon
GCACTGACTCGGGCAGGGAAGAGCTCCCCGACTCCTTCCCATCGGCTCCAGCAGAGACGCTGCCCCACTTCCTGCAGGAGCCACAGGACGCCTACATCGTGAAGAACAAGCCCGTGGAGCTGGGCTGCCGTGCCTTCCCTGCCACACAGATCTACTTCAAGTGCAACGGCGAGTGGGTCAGCCAGAGTGACCACGTCACCCAAGAGGGCCTGGACGAGGCCACCG
Seq A exon
GTGAGCCCACGCCACCCCACCCCCACCCGCACCCCCAGGTCACTCCGAGCCCAGAGGGCTCTGGGCCTGGCTCCACACTGGCTCTGTGTGAGCCCTCACACAGCCATGGTCCCCCCAGGGCCTCAGTTTCCCCTCGGGTTCACCCTGGATCAGTGTCTTCCCAAGACTTGGCCTCTTGCCCCGTCTGACTTTGGGTGACCGGGTGAAACAGCACCACATCGCTTTCTGCGTGCTTGTTCCCTTTCCCAGTTTCTTTCCATCCTCTGCTTGCATCAGAGGGCAGGTCCAGTCCAGCACAGGTTCTTCCCCCCTCTCCCCGGCACCTGCTCTGCTCCCTGTCGAGAGAGAGGAGCTGGTCCTATCTCACAGCCCTGCCCCCAGCCCCAACCAAAATTCTCGACCAGGTCCTCTGGGTCTGTGAGAAGTGATAGTGTTTTCTTTTCATGATAATGATGCAGTACTTCATTCATAGAAATTAATTGGTTTAGGGTTTTTTTTAAAAAAAAAAAAACAGGTTAGGCGCAGAGAGGCCTGGCAAGTGCAGTGGTGCAGGTGTCCTTAGGTAAAAGGGTAGCAGGAAGTGAAAGAGGAGGAGAAGGGAAAATTAAGGAGATCAAGCCCTGAGCCTTTAGAGTGGGAGCACTGACTCCAAGACCCTAGACTACTGCTACTGCTAAATCGCTTCAGTCGTGTCCGACTCTGTGCGACCCCATAGACGGCAGCCCACCAGGCTTCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGATTGCCATTTCCTTCTCCAATGCATGAAAAGTGAAAGTGAAGTTGCTCAGTCGTGCCCGACTCTTATCGACCCCATGGACTGCAGCCCACCAGGCTCCTCCGTCCATGGGATTCTCCAGGCGAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCGGAGAACTAACCCTAGGGAGTATCAGATAATGAGAACTCACACAGTGGAAACCACTTGAATACAAGACCAGGCATCACCCAACCACCAGTAGCTCCCTGTGCAGGATGCCAGGGTGCTAAACCACAAACAAAACAAAAATACAAACCCAATCATCAGCAGACAGGATCACCACCTCACTCAGCCCTGCCCATCAGAGGAAAAACAAACAAACACTCAGCACAAATCTCACCCTAAGCTCACACAAACCACCGGACCAACCTTAGGAGGGCAGAAGCCAAAAGGAAGAAAGAATTCAACCTTGAAGCCTGGGAAAAGGAGACCTCAAACACAATAAGTTAAAAAAAATAATGAAAAGGCAGAGAAATACTACACAAATGAAGGAACAAACTAGAAACAGAGAATCCAAATAAATGAAGAGGAAATAGGCAAAACTACAGTCATCAAGACAGCATGGTACTGGCAAAAAAACAGGAGTAGAGACCAATGGAACAAGATAGAAAGCCCAGAAATGAACCCATGCTCCTATGGGTACCTTATTTTCGACAAAGGAGGCAAGAATATACAATGGGACAAAGACAGCCTCTTCAATAAATGGTGCTGGGAAATCTGGACAGCTACATGTAAAAGAATGAAGTTAGAACACTTCCAAACACCACACACAAAGATAAACTCAAAATGGACTAAAGACCTAAATGGAAGACCAGAAACTATAAAACTCTTAGAGGAAAACATAGACAGAACACTCGATGACATAAAGCAAGATCGTCTATGACCCACCTCCTAGGGTAAGGGAAATAAAAACAAAAGTAAACAAGTGGGACCTGATTAAAAGCTTTTGCACAGCAAAGGAAACTGTAAGCAAGGTGAAAAGACAACCCTCCGAATGGGAGAAAATAAGAGCAAATGAAGCTACTGACAAAGGATTAATTTCCAAAATATACAAGCAGCTCGTACAACTCAATGAGGAAATAGGCAAAACTACAGTCATCAAGACAGTATGGTCCTGGCACAAAAACAGAAATAGAGACCAATGGAACAAGATAGAAAGCCCAGAAATGAACCCATGCACCTATGGGTACCTTATTTTCGACAAAGGAGGCAAGAATATACAATGGGGCAATTGTATATTGCCCATTCAAAACAACCCAATCAAAAAGTGGGAAAAAGACCTAAACAGACATTTCTCCAAAGAAGACATACAGATGGCTAACAAACACATGAAAAGATGCTCAACATCCCTCATTATTAGAGAAATGCAAATCAAAACCACAACGAGATAACACCTCACACTGGTCAGAATGGCCATCATCAAAAAGTCTACAAACAATACATGCTGGAGAAAAGGGAACGCTCTTGCACTGTTGGTGGGAATGTAAATCGATACAGCCACTATGGAAGACGGTATAGAGACTCCTTAAAAAACTAGGAATAAAACCACCATATGACCCAGCAATCCCACTCCCAGGCATGTACCTGAGGAAACCAAAATTGAAAAAGACACATGTATCCCATTGTTCACTGAAGCACTAGTTACAATAGCCAGAACATGGAGGCAACCTAGATGTTCATCAACAGATAAGTGGATAAAGAAGTTGTGGTACATACACACAGTGGAATATTGCTCAGTCATACAAAGGAACACAGTTGAGTCAGTTCTGATGAGGTGGATGAACCTAGAATCTGTTGTACAGAGTGAAGTGAGTCAGAAAGAGAAAGATAAATATCGTATTCTAATGCATATAAACGGAATCTAGAAAAATGGTACTGAAGAACTTATTTACAGGGCAGCAATGGAGAAACAGACGTAGAGAATAGACTTATGGTCATGTGGAGAGGGGAGGAGAGGGTGAGATGTATGGAAAGAGTAACATGGAAACTTGCATTACCATATGGAAAATAGATGGCCACGGGAATTTGCTGTATGACTCAGCAAACTCAAATGGGGGCTGTGTATCAACCTAGAGGGGTGGGATGGGGCGGGAGATGGGAGGGAGCTTCAAAAAAGAGGGGGTATATATATACCTATGGCTGATTCATGCTGAGGTTCAACAGAAAAGAACAAAATTCTGTAAAGCAATTATCCTTCAATAAACAAACAAACAAACAAACAGGTTAATAATACTAAGTAAATAACCATAGAGGTGGTGCTAGGACTCACCCGAGTCCTGCAGGAAGGGAGGGTGACAGAAGCGTGGGAAACAAGGAGGAAGAGTGAGGTGTGTGCGGTTCCCCGGGCAACCCCCAACTCCAGGCAGGAGGCAGCGCCCCGGGCTCCTCTCATCTCACGAGTCCAGCCTCTGTTTACAGTACAGGACCCTTGGGAGTGGAAAGCCTTTCCCAGACTCAGGCCAGCAATGGGGGCCGTCTACTCTGGTCACCTGTGGGCAGCCGGCTTTGTGCAATCCCAGCCAACCCCAGCCTCCAGGTGGTTCCTTCACCCCAGATCCTGCCTTGTCTTTGATTTCATTTTTAACCTCTCTTCCCTGACCTTTTCTTTCTCCTCCTTATTCATCCCTTCCCTCCTTCCTTCTGTCTCTTCTGCCTCTCCCTTCTCATCCCTGTCTCCTTTTGTGTCTGCCTTTTCTTCTTTAACTAACTTTTATTGGAGTATAGTTGCTTTATAATGTGTTAGTTTCTACTGTATAGCAAAGTGAATCAGTTATATGTATACATATATCCCCTCTTTTTTGGATTTCCTTCCCATTTAGGTCACCACAGAGCACTGAGTAGAGCTCCCTGAGCTGTACTACAGATTCTCGTTAGTTCTATATTTTACACATTGTCTTTTTTCTTTATGCCTCTCTCTTTTTTTGTGTCTCTCTCTTTTTTCATTCTTGTGTCTCTCCCCTGACATACTCTCTTTCGTTCTCTCTCCTTTTTCAACTTCTATTTTTCTATGAAAAGCTGACATTTCAGAACCATTCAGGCTTAAAATCATACCCCAGAATGTACTTCATGCCACTCAACACTATATCCTAAAAATTGGTTAAAATGGTAAGTTGTAGGTTATGTATATTTTACCAAAATTTTTTAAAGAATCTCAAGAATTTAAAAAGTTAGATTTGGAATCCCATTCTCACCCAAAATCTTAAAGTTAGAAGAAGAATTTTTAAAAAGCAAAAATAACCTGTGTCCCAGCTGCCTCCATGCTCTCTGGCTGTGTGACCATGAGGAAGTCATTCAACCTCTCTGTGCCTCAGTTCCTCTCCTGATAAACTGGGATATTAACAGAAGGTCCTAGTGAGGCTGGAGCAAGGTGGTGCCTGCACAGCATTGAGCACGCTGCCGGGGCTCGGCGGGTGCTTAATAAATGCCCATTCCCTCCATCTTCCTTCTGGGTTTTTGTTGGCCTCTTTCCTCTGGAAACTTGTTGTTACTCCTCTGTCCCCCGACCCGCTCTGGCCCTGAAGAGCAAGGAGACAGCGTATCCTGCTGGGGCCCCTCTCAGACCCTGTGACTGCTGGTAACAGGGTGGCTCTTAGTCCCCGGCTGCCAGGCACACAAGCCCTGCCCATCCTAGAAATCAAGGCACCGTTGTCCCCGTTAGCTACAAAGAATGGACAATGGTCCAGCAGGCCACACCCTTGGCAGCACTGCGGCTGGTTCCTCCTGCTCCCACCCCTGGCCCTCCCTGGCCCTCTCTGAAGCCCTGGAAACACAGAGGATGACAGAGGGGGCCGACAGAGGCAGGGCAAGCCCACCCATTAGCTCACTCCAGATCGAGGCAGGCAGCCCAACCCTGGGTGTCCTGGTCAGGCACTGTCTGTTGCGCTGGGGGACACCTCATCTGGGCCCAAGTCCGGAAAGACTGAAGGCCCTAGCCTCCTGTCTGCCTGCTGGTGACCACTGCCAAGGTGGTGCTCCCGAAACCTTCTGGATGGATGGCCCCCTTGAGAGAGGCCATTCCTCCAGGCTCACAGCCTGGCAAGTAAAGGGCAGAGCCCACTGTCCTACCCCAGACCATGCAGCATCTCTCGGGAGCAAGCACTCCAGGCAGCCCCTGCTGCTTGTGGGCCAGGCACCGCACCCCACCCCCACCCCCCACAAAACCTTCTGCAAGAAGCCTCTTCCCTCCTGGTGCTCCCTGCTAGCAAACTCCCAGCCCCCACCCCCAACTTAGATCCCCTGCCATCAGGAGGGGATTCCTTACTGCCTCAACTCCCAGTGTAAGGGCCCCCCTCGCTTAGGATGCAGGAGAGTTAAGGCAATGATTTCACCGGGAGAGGTCCAGAGAGGTATCATTTATTACCAGGCAGAGCTCTAACTGGGGCAAGATGCCTAGTAGCTGATCTCAGCTTTGCTGGCAACTTGCTGTGGGACTTTGGGCCTGCCACCTACCATCTCTGCGTTTCAAGTTCTCCCTAGAATTGAATGAGATCCATATGAGCTGCCAGAGTAGATGTGTGTCCAGCATGGTCTGGGTGCTGTAATTGCCATGACTCATTTAGAATTTACCTTGAGTGTTTTACTCTGATGAGGGAACCAAGGTTTGGAGAGGCTAAGTATCCATAACTTAACTAAGGTCACACAGATGGGGAGTGAGGGTGGGGCTAGGATTCAAACCTGTCCAGAACCTGTCCAGTCCTCCACCTAACCAGCATGCCATGGTACCACGAGGTGTACACTCAACATTCCTGCCCTCGAGGGGCTTATCAGAACCCACGTGCAACCAGGAGAGGATGAACTGAGATACCTGATGTCAAGGAGGAGAGACAGGGCAGTCAGGGAGGGCTTCCTGGAGGAGGCAGTCTCAGTTCTTTCACAGGCTTTGGGAGGAGCTTCAGATGGACACCCTCATCCAGGAGGCTTCATCCCTTACTTGAACGTAGAGCATTTTGTCATTGAGGGAGTGAAGGCAAAAGAGTAAATGGTTCCTTTTGTGTGTGCTAGTGCACCCAGTTATCCAGGGAACCCCTCGGGCCCCAACAAGGAGCCATTGAGAGGTTGGAGGGTTCCCAGGAAAAGGGGCCTCCTCTTAGCTTCAGCCCTACAGTCTCCTGAGCAATGGCCAGAGATCACACGCTTACCTCGTATTGGTTGAGCTCGCTGACTGTCTCAGACCCTGGGCCACAGCAGTGAACAGGGCAAAACCCCACCTCATTCTCCTGCAGGAGATACAGTTCCTACATGAACATGGCAATAAATAATGCAGTTTCAGACCATGGTAGTGCCATGAGGGAATCGGGCTGGGTGGGGAGTGATAACTCTGCAGACCAGTGTCCAGTGCACCTATGGGAGTGCTGAGTGGCTCTCTGAGAGCTGGTGGGGGTGGGCCAGCATTGAGGGGCTGCCCTCCGAAGCGAGACCTAGCGCAAAGCGGATGGTCACTGGGAGTTCACTGGACGCAGAAAGGACAGAAGAAGAGTCCCAGGCAAAGGACTGCATGTGCAAAGGCCCTGTGACTAGAGAGGCTGGGGGAGCATGAGGCCCTCAGAGACGCCCAGTGAGGCTGCAGTGGATAGATCTTACAGGGCCTGGAGGCCACGTGGAGGGTCGGGGTCTTTACACCAGGATGACAGGGACATAGCAGGGGGATGGATGCCACTTGGACCTTTCAAAGAGCACACATTGTCTGCAGGGTGGCAAGTGGATTGAATGAGGGCAGAGGGCTTGGGTTAGCCATTATTGTTTCCAGGTGAGCTGTGGTGGTGGCTTGGGCCAGGCTCAAAGCAGAAGAGATGAGAAAAAGGGAAACGGGAGGCAGTGGGAGAGGAGCCCCCAGGACTGGAGGGTGGGGAGGGGTGAAAAGGACACAGGATATCATGGTCCCATATCCTGTGTCTCCTGCCCCCCCACCAACGGAATCTCTCTCCTCCTCCCAG
Seq C2 exon
GCCTGCAGGTGCGAGAGGTGCAGATCGAGGTGTCGCGGCAGCAGGTAGAGGAGCTGTTCGGGCTGGAGGATTACTGGTGCCAGTGTGTAGCCTGGAGCTCTGCAGGCACCACCAAGAGTCGCCGGGCCTACGTCCGCATCGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014270:ENSBTAT00000018961:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]