HsaINT0177868 @ hg38
Intron Retention
Gene
ENSG00000107731 | UNC5B
Description
unc-5 netrin receptor B [Source:HGNC Symbol;Acc:HGNC:12568]
Coordinates
chr10:71279821-71284863:+
Coord C1 exon
chr10:71279821-71280045
Coord A exon
chr10:71280046-71284719
Coord C2 exon
chr10:71284720-71284863
Length
4674 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
GCTCTCTCTTCTCCTCCCAGGCC
3' ss Score
10.82
Exon sequences
Seq C1 exon
GCACTGATTCTGGCAGCGAGGTGCTCCCTGACTCCTTCCCGTCAGCGCCAGCAGAGCCGCTGCCCTACTTCCTGCAGGAGCCACAGGACGCCTACATTGTGAAGAACAAGCCTGTGGAGCTCCGCTGCCGCGCCTTCCCCGCCACACAGATCTACTTCAAGTGCAACGGCGAGTGGGTCAGCCAGAACGACCACGTCACACAGGAAGGCCTGGATGAGGCCACCG
Seq A exon
GTGAGCCCGCCCCACTTGCCTGGGCACCCCAGGACACCCCAGGCCCAGAGGCACAGGCCTAGCTCCATGTGAGACTTCACACAGCCATGGTGCCCCCTTGGATTAGCATTTCCCCAAGTGCTGGCCACATGTCCCAGCCTGACTTTGGGACCATCTCCACTGCATTGGACAGCACCGAGTGCCCTGTGAGCCCTCACTCCCTTTTCCACTTTCCATCTTTCTGCTTCTGTTAGGGAGCAAGTTCCCGTCAGGTGGGGGTTCTTGAGCCCTCCCAAACACCTGCTAATCTCCCTGTTTAACAAAGAGGGCAGGTCTCTGCCTCACAGCCCTGGCACCCCACGGCACCGACCCAGAATTCAATGCAATCGTTATTTTTACAGTTCCCTTCTGTTTGTGGAAAGTGATACTGGTTTCCATTCACAATAATGATATGGCATTTCCTGTGTTGAAATAAATTGTTTTAGGTTAAAAAGAAAAAGTTGATAGTATTAAGTAAATAACCATCCAAGTGGTGCTGGGATGTAGACCAAATCTGGAGGGAAAGAGGAGAGCAGCTGAAACTGGGAAACTCGAGGAAGCCTGGGGTCCCTTCCTTCTCGGATATGTGGGGAGCTCTCGGTACTCCCAGAGGAGGAGGCAGAGCCCTGGGGCTCCCCACATCTCCCAGAACTGGGCCTGCCCCCAGGGTGCCCTCGAGTCTAAGTGAGGGGCTCTTGCTCACTTGTCACCAGGTCCCTGTTGATAGTGCAGGAGCCCTCGGGGTGAAAAGCCCTTCCTGGGGCTTAAGACAGGCAGATGGGACCCCCCCTTCAGTCACCTGACAGAGCCAGCCTACCCCAGACTCAGGGGGCTCCCGAGTAGCCTTCCTGGGTTTTGTTTTGTTTTTCCCGTCTCTTTCTGGATCCTTTGCTTTCTCCTTCTTCAGCTCTGTTTATTTCCCTGCCTCTCCCTGCTCATTTCTCTCTCTCTCTTTTCCCTATGTGCCTGTTTTGCTTCTTTCTTTTTCTCTTCATCCCCCTCTCTCTGTCTCACTCTCTGTCTCCCTGACATGCTGTCTCACTGTCCTTCTTTCCCCCTTCTTTAGTTTCTGTTTTGTCATGTAAAGCTCACAGATTTCAGAAACAGTCAGGCTTAAAACCATACTCTAGAATGTACTCGAGGTCACTGAACCATATGCTTACAAATGGTTAAAATGCTAAGTTTTATAGAATGTGTATTTTACCACAATTTAAACATAATTTTAAACAATAGATTTGGAGTCCCATGCTCACCCAAAATATAAAAATGGAAAAAGGAATTTTTTTTTTTTTTTGGAGACAGAGTCTCGCTCTGTCACCCGGGCTAGAGTACAGTGGCGCAATCTCGGCTCACTGCAACCTCCGCCTCCCAGATTCAAGCAATTCTCCTACCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCGTGCCACCATGCCAGGCTAATTTTTTGTATTTTTAGTAAAGTTGGGATTTCACCGTGTTAGCCAGGATGGTCTCAATCTCCTGACCTCGTGATCCCCCGGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACACCCAGCTAGAAAAAGGAATTTTTAAGGGGAAACAAAACAACACATATTTTCCAGCTGCCCCCACTCTTTTTCTGAGTGACCCTGGGGAAGTCACTCAACCTCTCTGAGCCCCAGTTCTTCTCTTCGTAAACTGGGAAGTTGACTGAAGGTCCTGGTGAGGGTAGAGCCAGGTGGCGTACACATAGCACAGAACAGCATGCCAGGGCCCAGCAGGCAGTCGATAAACACCTGCTTCCTCTGTCCTCTTTCCGGGCTTTCCTTGGCCTCTTTCTCTCAAACGGTCCTTACCTCTCTGCCCACTGAGCCCCTCTGGCCTGTATCAGAGGTCAGCCATCGGGGTCCAGGCAAGGCGAGGGAACAGTGTGCCTGCTGGGGCCCCTCACAGGCCGTTAGCATAGTAATAATAACCCTGTGATTATTACTAATAGTAACAGCATGGCCCTTACCAAAACCCTGCCACCAGGCACACAGGCCCTGCCAGCCCTAGAAATTGGGGCACTGTTGTCCCCATTAGCTGCAAATAATGGGCAGAGCTTCCTTGGCAGTGGTGGGGCCTGATTCCACTTCAGCCTCCTACTCTCTAGCCTTGGTCTGAGGCCTGAAAACACAGAAGAGGACAGCTGGGGGCCAGGAGAGGCAGAACAGCCCCCCACCAGCTTATGCCAGATTGGGGCAGGCAGCCCAACCCTGGGTGTCCTGGGCCAGGCATTGCCATGCTTGGGAGGGCAGTCTGATGCTGGGCCTCAAGCCTGGGAGACCGAAGGTCCCTGTCCTATGCTCCCTGCATCTCTGCTTGCTGGTGATCATGGATGAGGTGTCACGCCTCCTCCCTGGTGGTTGTTTCCTTCTATCCAGCTATTGGTGCTGCTGAAACCTTCTTGCATGGATGACCCCCTTAAAAGGGCACACTCTTACAGGTTCACAGTCTGGTAAGCAAGGGGCAGGGGCTGTGCTCCCTGGGTCATGCATCATTGACTGTGGAGCCAGCCTGTGGGCAGCCATGGCAGGCAGGCACTGTCACCCACCCCTGAAGCAGCCTCTTCCCTGGATGGCATACCCCTAGCCACCTCCCATTTACATCCTTGGCCATCAGGACGGGGCTGTCCCCCATCTGGACTCCCTGCACAAGGACCCCACCCTCCTCAACAATAGGAGAGTTACAGCAATGACTTCATCAGGAGAGGTCCAGAGAGGAGTTGTGGGGCCGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAATTCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACTGTGTCTCTACAAAAAAATACAAAAAAAAATTAGCCAGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAAGCAGGAGAATTGTGTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCGAGATTGCGCCGCTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAGAGAGGAGTTGTGGGTGAGGGGACCAAGCTCTAACCTGGGAAAGACACCAGGGAGCTGACCTCTGCTCTGCAACAGCTTGCTAGGGGACTTGGTGCCTGCCACCTACCCTCTCTGAGCCTCAGTTTCTTCAAAGGTAACAGAAGAAGCTGGTTGAGATCCAGATGACCTGCCAGAGTATATTTGTGTCTGGCCCGGGCTGGGCGCTGTGGCGGAGTAGTCACCATAACTTGTCTAGAGTTTACCTTGAGAGTTTACTATGATGAGGGATCTGAGGCTCAGAGAGACTGAGTAACTTCACAAAGGTCACCCAGCTGGGGTTTGAGGGTGGGGCCAGGACACAAACCTGTCCAGCCATCCAACCCTGTCCTTACCCACCATGCCACCGGCTGTGCGTACCTTAACAATCCATGGTGCAATGAGAGGATGAGATAGGACACATCGTGGCAGGGAGGAGCAGCTTTAGAAATTCTGAGACACAAGGCAGTCAGGGAGGCTTCCTGGAGGAGGAAGAGGGCTCTGTAACCTTTGGGGAGGAACTTCAGATGAATGTCCCCTTTCCTGGCAGGTTCCCCCCTTTCCTGAGCATGGAGGGCTTCGTTGAGGGATGGTTAACAGAAAACCGAGTGACCCCCTTGTGTAGGCCGGTAGGTCCTGTTATGTAGGGAGTTTCCCAGGCCCTGACCGGGGAGCCATTGAGAGATCAGGGGCTCCCTGGGAGAGGGACTTCCTCAGCTCCAGGCCCACAGGGCCTGAGTAGTGACCAGGGAGAGCAGGCATCCCACCTCTGCACGTGCTGAGCCCCCTTTCTGTGCCAAGCCCTGGGCCACAGCAGCAAGCAGGACAAAGCCCCATCTTGTTCTCCTGCAGGAGACAGACATTTAACACATGAATGCGTCCATAAATAATCTGAGTCCAGCTAATGGTGGGTGCTGGGAGGAGACGAAGCTGGGTAGGGGAGTGACTGCTGCATAGACGAACTTCCGGGCACAGTGGTGGGAGTGCCGAGCAGTGCTGGGAGAGCTGTCGGGGAGGCGCAGGGTGGAGGGGGCTTTCCTCGGGAAGTGAGGCTGATCCGAAATCTGGCAGGGACTGGGAGGCCACCAGGCCCAGAGGAGACAGAAGATTCCAGGCAGGGGACTGATGTGCAAGGGCCCCGTGGCTGCAGAGCCAGGGAACATGAGGGCCTGGAAGACACCCGGTGAGGCTGCAGTGGGATGGGGATGGTGGATGCACAGTGCAGCTCAGAGCCACTCCTGGGGATGACCCTACCCGCCTGCAGGCCACTGAGACCCCGCATGAAGGGTCTCATAACGGGGGGAATGACACACCACTTGTGCATTTTGGAGATGACACTAGCTGCCAGGTAGAAGATGCATTGGTGGGGCAGAGGGCTTGTGTTAGCCACTGCAATGTGCAGGTGAGTGGCCATGAAGCTTGAGCCAGGGTGGAGACAGGAGACAAGAGGAATGGAGGGAAAGGCACTTGGGCAAGAGTGCCAGCAGGATCCGAGGTGGAAGGCCGGGGGTGTCCTGTGCCTCACATCCTTGCTTTGCCCCTGCCCCCTGACGGCTCTCTCTTCTCCTCCCAG
Seq C2 exon
GCCTGCGGGTGCGCGAGGTGCAGATCGAGGTGTCGCGGCAGCAGGTGGAGGAGCTCTTTGGGCTGGAGGATTACTGGTGCCAGTGCGTGGCCTGGAGCTCCGCGGGCACCACCAAGAGTCGCCGAGCCTACGTCCGCATCGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107731:ENST00000373192:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains