GgaINT0042383 @ galGal3
Intron Retention
Gene
ENSGALG00000004569 | UNC5B
Description
NA
Coordinates
chr6:12859168-12862622:+
Coord C1 exon
chr6:12859168-12859389
Coord A exon
chr6:12859390-12862478
Coord C2 exon
chr6:12862479-12862622
Length
3089 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CGTCTGTCTGTCCCTTTCAGGGC
3' ss Score
12.6
Exon sequences
Seq C1 exon
GGCTGGAGTACAGCGAGGTGCTGCCCGACTCCTTCCCATCGGCGCCGGCAGAGACGCTGCCCCACTTCTTGCGGGAGCCACAGGATGCCTACATCGTCAAAAACAAGCCTGTGGAGCTGGTCTGTAGGGCCAACCCTGCCACCCAGATCTACTTCAAGTGCAATGGGGAGTGGGTAAACCAGAACGACCACGTCACCACTGAGAGCCTAGATGAAGTCACAG
Seq A exon
GTGAGCACATCCTTTGCCCATTCCCTTTATTTTTTCCAAGGATTTCTCCACCACACTTATGTCATACCATAACGGGCCAACATGGAGACCTTCCCAGTCTTTTCTCCTTTCCAGGTTTCTTTCTCCCATTGTGCGTCCATGCTGTGGGTTATTCTCTTCCAACTGGTCTCCTTCTGACTAATTTTGTCATTCTCAGGTGGCTGCAGCCTCCTGAAGCCACTTTGATGTGTTTTTTGCCTCCTCACTCCATGCACACCTTTTCTCCCATTCCATACCACAAGTGAAAGAGGAGCTGTCCCTCCAAGCTCATTGCTCATGAATGAGATGAGCCCCAGCTCATACTTCAGCTGTACCCCATAGAGAAGCAATTTATTGACCCTTTGAGTCTTGGAACAGGTCCTCCAAGCCCCCAGCTACAGGAGGAGCTCTGAGGAGCTGGTCAGCTTCTTGGAGAGATGGTAAATAGCCAGGCCATGGGATGGAGGGCTCATGTTTGGTGTGGCTGGGTGCTGTCAGTGGGGTCCCATCAACCATGATGGGAGATTGCCCATGGAAAAAAAGTTGGTGGAAAACAAGCCCCCACCAAATTTGCATGCTAGAAAGTGTGGAAGCCCAGCAGCATATTCAGGGATGGGAATAATCCCACAACTTGCTATTGCACCGTTTGATAAATCCATGGGGCTTCCTTATCTGAGGCAGTTTATTAACCCCATCCCCTGCAAGATAAAACCAAAGGAGAAGGGTTTCACAAGCTGGCAGCGAATGCAACCACAGGCAGGAGAGGAGGAAGGATCGAAGAGCTTGGAGGGGTTGCTTTTAGTGAAGTGGGTTTGTGAGGCCATTCCAAATAAAGCTGGGTCACGTGCACAATTACCCTTTGGCAGGTTGCAGCATCAGTGCGTTTAATGCTGCTGGAAAGGAAATGCTTTCCTACAAAATGTCGCATCAACACGTAGGCAATCCTCATTGCCACTGGGTATGGTAAAGGCCAGCAGCTTAGTCAGACTCACAGAAGGATTAGATATGTAATGTTTAGATATTTAATGGATAATGAGAACTGGTAGGGTGCGAAGAGAGCTGAGCTCTCCTGTGCGTCCGTGGACAGATCTGAAACAGGGAGGAAAGTAGGAGGTGTTCTAGATGTTTCAGTGAGTCCCTCAGCATCTTCCCCATCTTCCCTGGCTGCTCACCATATCTCAGCCAGCTCCATCCCTGGTCACAGAGGCAGATCCCATCCCAGTGTGGGGCTTACCCTCACTGCATTCAGTTTCATGAGCCTCTCTGTGCTTCCAGTTCTGGCTCGATAAAGCCGTGCTGCACTGCTCCACCTTTGGAAGGATGATCGAAAGCACAAAGGAAGGCTGGTTTATTTAATTAGGAGCAGAGCTACCAGCGGGAATATTGAGCGAGCATGGGCTGGCAGGAGCCTGGGGCTTGCTGCCTTCCCCCCATCCACCCTCCCATCGTGGGGAGGTGCCTCTAAGGGCACTGCAAGCTCCACAGGATCATGAGGATGGTGAGACTGAGGGTGTGAGGGCAAGCTGCTCTAGGGCAAATTGGTGCCCACCAGTGACTGAGGGGCTGTTTATTTATAGTGTCCAACTGGGTAAAGGCAAAGGTGCAGGTGCTGAGGGGAGGAGCATGGATGAGCAAAGCTGGAGAATCCAGCCTTGAGATGGCAGAAGGCTTCTGTGCAGTATGAGCTTGCCCATTTCCTATAGAGAAATTTTTCTGGGGGCTCATTTGCCATTGGCTTTTCTCCATGGTGTAGCTCTGGGCCAGCATGTGAACAGTTTTGGGGAGGAAACCATGCGCGTCCTTCATGCAGACTTCAAAGATTATATTTCTGCTCTTGGTGCAAACCTGGCAAAAACTACGGTGCGGAGGTGATGCCGTGCATGTAAAAAACATTCAGGCTTGGGCATATCTGCCTTGGAGCTGGACCCAAAGCGGGTTGTTCTGCCGAAGATCCGCATGTGCAGTGCCTGCTGTTGTTGAGGGATGCTGCTGCAAAGGGCACAGAGGGAGGTGGCCACGATGTAATGGGTGAGCACTGCCGGGTGTCCACAACTCTCAGGTGCCCTTGGTTAAAAACCTAGAAAAGAGACTTGCAAAGAAAATGAACTTTTAAGGTGACGTGTCTAGCTCTGTAGAGCTCTGACTGCATCGGATCCAAAGCATCTCATGTGGAAGAAAGCAAAAATAGGCCAAGTCGGAGAGGATAATTCAGCCGGATGAATAGGGACCGTCCATAAAAGCAGCCATGTCTTGCTGTGTGTAAGCTGGTTAAATAGGCACTCTGTGGTTCGTAAGCTTATCCTACACTTTTGGAGGGAGAGCGTCTTTGCTCTCAGTGCTTACAGAGGCAGCAGAGCTCCTCACCACATGTCACATCCCACCTGGCTGGGGTTTGCAGACGAGAAGTGAGGTTTCAGAGCGTCCCTTTGGAGGTCAGCTTCTGAGAGCCCTGGTTTTTCAAAAGCACTTGGCCCAAATGCCTTTTGTTGTTCTTTTTTTTCCCTTGCTGGCAAAACAGGCAATATTTCCTTATTCGTCAGCTATGCCACAGGAAGGCAGCAGGGAGACAGTAATTGCTCCTTGCAGTGCTGGAAGCAAGCTCACAGAATTACAGCTGGGGAGCATGCGGCTCTGTGTGGTGGTGAACTCGGGGCCCTTTTATAAATAGCAGCTCTGAGTTTTATCCGGGGACATAGATGTGGTGGGAGAGCAGCAGAGCAGCCAGGAACGGAGAGAAGGTTTGAAAGAAATGGAGTGTGGAGTGTTGTAGTGTGTACTTCTCTTGTCCCATTCCTCTCTCCCATTGGGAATGGCCCCATCACCAGTGGCTGACAAGCATCAAACTCTTGTTGAAACCTCAGCATCCTCAGATGTGGGTTTTCCAGCTCCCTGCAGACCATGTCCTGGCTGTGTGGTGTCACCTGTGTCATCGTCACATCCATTCCGCAGCCTTGGAGGACATTGTGGAAGCCACCACAGATCGTGGGATCCCTACAGCCCCCTCTTCCAGCCCCAAACCCTGCCGCCACCTCCCCTCCTCCTAGCTGATGCCGTCTGTCTGTCCCTTTCAG
Seq C2 exon
GGCTGCTGGTGCGGGAGGTTCAGATCGAGGTGTCCCGGCAGCAGGTGGAGGAGCTCTTTGGCTTGGAGGATTACTGGTGCCAGTGCGTGGCCTGGAGCTCTGCGGGCACCACGAAGAGCCGCAGGGCGTACGTCCGCATTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004569:ENSGALT00000033690:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]