DreINT0171853 @ danRer10
Intron Retention
Gene
ENSDARG00000033327 | unc5b
Description
unc-5 homolog B (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041213-1]
Coordinates
chr13:29063199-29065639:+
Coord C1 exon
chr13:29063199-29063423
Coord A exon
chr13:29063424-29065495
Coord C2 exon
chr13:29065496-29065639
Length
2072 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TCTTTTGTTCTCTGTCTCAGGTC
3' ss Score
12.17
Exon sequences
Seq C1 exon
ATGGCAGCGATTACAGTGAAGTTCTCCCGGACTCGTTTCCATCAGCTCCTGCCGAACCGCTGCCAGAATTCCAGAGTGAGCCCGAGGATGCATTCATAGTAAAAAACAGACCCGTCAAACTGTCCTGCAAGGCCGCCCCTGCCACACAGATATACTTTAAATGCAATGGAGAATGGGTGAACCAGAATGACCATGTGACCAAGGAAAGTCTGGACCATATCACAG
Seq A exon
GTAATTTCTGCTTTATGGATACACATTTTTGCTGGCACCTCTTGATACAGTTGTAAATCTATGGACCTTAATAAAGAGTTAGCAGGGTGTCCGTGGGGTTTTAAAAAGTATAAGTTGATAAATCAGTGTAGAGAAATTAAAGGCCCTTAAAAAGTATTAAGAAGTCCTTAATCATAATTTGCAAGGTATTACATTTTTCATCATTTTTGATTATGCAATGTTGGGTTGTATGCTAAAGTTTGCCTAAATTACATCTGCGAATATCAGGATGCTGTGTAGTTTATGAAATTAATGAAATTCTACTAGATTTGACATCACGCTGCTTTGTTTACTGCAGTAACCAAGGCAAAACCATTATTTACGCAGCTTTATTAGTGGCAATCTGCTAAATTAGCTAGATTTAATAGATTTTTATTTAGTATATCAATAATGTTTTAGTTCTGGATTAGTTTCTTACATTGATATTTAGTAGGTTAACATCTCGCCAATGTTTCCGGTTGAAAAGTGGTTATAATGTTTTAAAATGTATGGTAAGAGTCTTAAAATAGGTCTTAAAAGGTATTGAATTTCACTCTCTGATTCCTGCGTATACTCTGGTTAGAGGTTCCAGTTTGTCCTGAATGTGTTTGGGTTTAGATTTAGGTTTTGGTTTCTCTTTGGTTTGAAAGGCTCTTTACTGACAGAATCTAGAACTTTGGCCACACAGAATAAATATCTGAAAGAACAGTTGTTCTGGAAGAAAAAGTTCATATTACTGTATGTTCTCCATAGGGGGACTGATTTTGAACAATACAACACACCGACAAAGGATATGAACAGCTTATAACCTTATAAAGGCCTAAAGTGAGTTTTGTGTTTGGTGAGGAATAGTTAACAGTGTAAATATAAATGTACTTACAGAAATTTAATACAGATGTAACTACATGCAGGTATTTTATCGGGCATAAGTAAAATCATGTATTTACACAATATGTGCATTGTAACGAATTACTAATTACATTGTAAGTACATATAAGTTAAAACCACTTCATATAAAGGGGACCTGAAACTCATGCATTAAACAAATCATAGCTTGCTGGTTTATTTCATGACCTCTAATGAATAATTTAAAAACTCTTAAGACAAAATAAATAGAAAAATACAACCAGTGCTCAAAGCCATTTCTTTAGAAGTGGTTGTCTATATTCCTCCGGGTGCTCCGGTTTCCCCCACAGTCCAAGGACATGTGGTGTAGGTGAGTTGGGTAAGCTAAATTGTCCATAGTGTATGTGTGTGAATTAGTGTGTATGGATGTTTCCCAGTGATAAGTTGCAGCTGGAATGGCATTCACTGTGTAAAACATATGCTGGAATAGTTGGCGGTTTATTCCGCAGTGGCGACCGCTGATAAATAAGGGAGTGAGCTGAAGGAAAATTATTGAATGAATTAAATGATGTACTTTTATTTACTCATTTATTGTAATTTATACATTGTAAAACCCAAAAAGTTAAGGTCACTCAAACCGTTTGAGGAAATTGCTTGCAAAAAAAACATTTAAGTTCAAAAACTAATCCTAATGAGTACTGTGAACTTAATCCATTTGAGTAAATAAAGCAATTTGAGCACAGTAAAACCCAATCAATGAAGAGAACTTAAACCAACTGAGTACTGAAAACCCAATAAGTTAAGGCAACTCAAACCGTTTAAGGAAACTGATTGCTGCAAACCATTTGAGTAAAAAAAAATGGATCTATATGAGTACTGTGAACTTAATCCATTTAAGTTGAAGTAATGAGGTATTTAATTTCTCTGAGTTCAAAACTCTTTTCAAATGAGTAGAATTAACTTTTAGTAAAATATGAGTTACCTACACTTATTTCATTTGATAAAGTTGACTGTTGGGTTTTACAGTATAATTTTGTTTTAAATGTATTATTATTAAATCTCCAAAATGCATCAATATAAACACAAGTGTATTATTTTTAAACAAAACAGTGTTGCAATTTCCCTTCCTCTGTCAGGATGTATAGTGACACAAATTTGAAAGCTGAGACTGATATATTCATACTTTCCTCTTTTGTTCTCTGTCTCAG
Seq C2 exon
GTCTGGTAGTGAGAGAAGTAGATATCTCTGTCTCCCGGACGCAGGTAGAGGAGTTGTTTGGGCTGGAGGATTATTGGTGCCAGTGTGTTGCCTGGAGCTCGGCAGGCACCACAAAGAGCCGTCGGGCTTACGTCCGCATCGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033327:ENSDART00000045951:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]