BtaINT0157562 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014270 | UNC5B
Description
Bos taurus unc-5 homolog B (C. elegans) (UNC5B), mRNA. [Source:RefSeq mRNA;Acc:NM_001099029]
Coordinates
chr28:27585416-27586122:+
Coord C1 exon
chr28:27585416-27585559
Coord A exon
chr28:27585560-27586018
Coord C2 exon
chr28:27586019-27586122
Length
459 bp
Sequences
Splice sites
5' ss Seq
CATGTACGC
5' ss Score
4.06
3' ss Seq
AACCCTTTCCCTTCTCCCAGACC
3' ss Score
10.16
Exon sequences
Seq C1 exon
GCCTGCAGGTGCGAGAGGTGCAGATCGAGGTGTCGCGGCAGCAGGTAGAGGAGCTGTTCGGGCTGGAGGATTACTGGTGCCAGTGTGTAGCCTGGAGCTCTGCAGGCACCACCAAGAGTCGCCGGGCCTACGTCCGCATCGCAT
Seq A exon
GTACGCTGCCCGGACGCCCCAACCCCGTTCCCTTGGGCCCTTTCCCCTTTCCCCATGGATCCTGGAGGGAGAGTTCTACACATAGACATGAGGGCACAGGGGCCACCAGCTCAGAAGAAGGCTCCAAGACCCAGAGCCTGTGCCACCTTTGGTGCCAGAATTTCTAATGGCCCCTTTTTACCTACTTATTTATATAACAAACCCATCAGCTTCCCTAGTCATCATGTGCATAGGATCCCAGAGCTAGGGAGGGAACTTTGTTCCCCTCAGTCCACCTGGTAAGGCCCCTGTCTTGAAGAAGAGATTCCCCTGGTAAAGGCCAGGAGTCCTGGTAAAATTTCCTTGGTGTGCACTGCCACCTCGTGGCTAGAAGGGAACACTTCAGGATCCAGCTCTGCCTGACTGGCCTCCTCCCGGCCCTGGCCTGACGGTGCCTTGGAACCCTTTCCCTTCTCCCAG
Seq C2 exon
ACCTGCGCAAGAACTTTGATCAGGAGCCTCTGGGCAAGGAAGTGCCCCTGGACCATGAAGTTCTCCTGCAGTGCCGCCCACCAGAGGGGGTGCCTGTGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014270:ENSBTAT00000018961:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0767911=I-set=PU(34.1=88.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGCGAGAGGTGCAGAT
R:
CCACAGGCACCCCCTCTG
Band lengths:
238-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]