GgaINT0042384 @ galGal4
Intron Retention
Gene
ENSGALG00000004569 | UNC5B
Description
netrin receptor UNC5B precursor [Source:RefSeq peptide;Acc:NP_001026396]
Coordinates
chr6:11351224-11353127:+
Coord C1 exon
chr6:11351224-11351367
Coord A exon
chr6:11351368-11353023
Coord C2 exon
chr6:11353024-11353127
Length
1656 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
CGCTGTCTTTCCCCCTCCAGACT
3' ss Score
10.94
Exon sequences
Seq C1 exon
GGCTGCTGGTGCGGGAGGTTCAGATCGAGGTGTCCCGGCAGCAGGTGGAGGAGCTCTTTGGCTTGGAGGATTACTGGTGCCAGTGCGTGGCCTGGAGCTCTGCGGGCACCACGAAGAGCCGCAGGGCGTACGTCCGCATTGCAT
Seq A exon
GTAAGTGCTCAGTGCATGTGGTGCATCGTTCCCTTTTGAGATCACAGGTGGCTTTTTTAGTTTAAATAAATGCCTCTCCCACCTACTTTTCCTCTTTTTGGCAATATAAGGAGTTTTCCAATGGTACAAACCATTGATTTACAATTTGCAAAGCCCTGGGGTTGCAAACCTTACATCCCGTGTTGCACATTTGGATGGATTAGAGGTGGCCAACACAAGCCTGGCTGCAAGATGCTGCTCTCAGCTCATGGCACAGCTCTGTGTGTGGGCACCGTCCTTACCCGCCATGGCACCAGCTGGGTTAATGGCTCAGCGCCCAGCAGCCTGCTCAGCTCTTCCCAGTGCTTTATTATCCTTAATAACCCGATGGTTAGCACCTTGTGCTTTTTCCTGAATCAGCGGCTCCGCATCCCTGGAGTCCCTGCTGTCATATGTCACTTCTCTAAGCTGCTGTTTGTGGGTGTCAGCCTGATTAAGGATGAGTTAATCAGGCTGTTACCCGGCTGAATTTGCTCTCTTAGCAAATGAGATGGCAAAGCTATAGGAGAATGGCCAGGCTTCCCAACTGGTAAACAGATTTTGCTATTAGAGGGCTAATAATCCCACGTCATCCAAAATGGAGGTGAATCAGCTGCACTGCTGACATCCCCGAAGGATTTAGACTCAGCAAAGAAAATGTTGCCCACTGAAGGGCTGGCTTCCGAGGAAGCCCTTTTGTCCCCAAGAGGGACAAGCTCTCAGCCAGAAGTTTGGTGCTCTTTGCTGAGAAGTGGTCATAGAATCATAGAACTTGGGTTGGGAGGAACCTTAAAGCCCACCCAGCTCCAATCCCTTTGCCGTGGGCTGGATGCCACCCACCAGATCAGGCTGCCCAGGGCCCTGTCCAACCTGGCCTTGAACAATGAAATGAAGCAGACTAGGTAAAGACATCTACTCTCCCATCCCCAGCATCCTGTGCCTGAGATCTCCAGGCTTGGCAGTTTGTGCCATCCTGTAAATCAGCGTCACTCTCTAATACTATCCATGCAGTTCCTGCTAACGAGCTGTTAGGACTTCTTACCCTCCCAGTTTCTCCACACCTGGTTATTTGGATCAAAGCCTGCGTGGCACTGCCCAGCATCCCCATGCTACGTACAGCTGGAAACATGAGTGCCCTTGCAGCGAAGATTGCATCATGGGCCTCATGCACAGCGTGGCCCGTATTTAGGGTGTACTGACAGCCCGTGTGGGTAAGGCATGTGTTCCCTGTGCTAGCTTTGCCACGCCATGTGTTCCCTGCAAAGGCACGGAGTGGGCAGCTGCTGAATTTGCAGTGGCCCAGCTTTTGAGAGTTGGGTGCTGGAGCAGAGGGTTGCAGCACCACCTAGTGATCCATGGGTGCTCCTGCTCCTTCTGTGGAGCAGCATCCTGCCATGTCCCCGTAGCCCTGAAATGTGGGAAATCACCGTGGCCCTCCTTCTCCCAGGACACACAGAATCATAGAATCATTAAAGTTGGGAAAGGCCACTAAGACCATCTCATCCAAACATCTGCCCATCGTATTTTGCTCCGCATTACCCTGTGTGTGTGTGCTGAGGTTATGCTCTCCCTCTTCAAGGTTTTATGAGGCACCTGGTTTCTGCAGCACACCACTAATCGCTGTCTTTCCCCCTCCAG
Seq C2 exon
ACTTGCGGAAGAACTTTGACCAGGAACCACTGGGCAAGGAAGTACCACTGGAGCAGGAGGTGCTGCTGCAGTGCCGGCCACCCGAGGGGGTGCCACAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004569:ENSGALT00000033690:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0767911=I-set=PU(34.1=88.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGCGGGAGGTTCAGATC
R:
CCTCCTGCTCCAGTGGTACTT
Band lengths:
199-1855
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]