RnoINT0160607 @ rn6
Intron Retention
Gene
ENSRNOG00000000567 | Unc5b
Description
unc-5 netrin receptor B [Source:RGD Symbol;Acc:621756]
Coordinates
chr20:30357251-30357809:-
Coord C1 exon
chr20:30357666-30357809
Coord A exon
chr20:30357355-30357665
Coord C2 exon
chr20:30357251-30357354
Length
311 bp
Sequences
Splice sites
5' ss Seq
CCTGTATGC
5' ss Score
0.98
3' ss Seq
TATTCTTGAACTCTCTTCAGACT
3' ss Score
5.79
Exon sequences
Seq C1 exon
GCTTGCGAATACGAGAGGTGCAGATAGAGGTGTCGCGGCAGCAGGTGGAGGAACTCTTTGGGCTCGAGGACTACTGGTGTCAGTGCGTGGCCTGGAGCTCTTCGGGAACCACCAAGAGTCGCCGAGCCTACATCCGCATTGCCT
Seq A exon
GTATGCCTCCCCGATTATCCCTCCCCCCACCTCCCCATTGAGGTCAGGAAGAGAAATACCCTCCACGGTATGCTAGGCTACACGGGCTCCTAGACCCAGAGGCCAGGCCTCCTCAGGCTCCGGGGTTTCCAGCAACCTGGAAAAGGGAGCTGGAAGATTCCAGGCAAGGTCCAGAGTCAGGGAGGGGAACCCTATTCCACAGGTAAAGGGATCCTGTAAACAGTTCCTTAGGTGTGCCCTGCCCCCTAGTGGCCACAGTGGGCATTTCACGCTGCCCTCAACACTTGATATTATTCTTGAACTCTCTTCAG
Seq C2 exon
ACTTGCGCAAGAACTTTGACCAGGAGCCTCTGGCGAAGGAGGTACCCTTGGATCATGAGGTCCTTCTGCAGTGCCGCCCACCAGAGGGAGTGCCTGTGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000567:ENSRNOT00000038537:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0767911=I-set=PU(34.1=88.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCGAATACGAGAGGTGCAG
R:
ACAGGCACTCCCTCTGGTG
Band lengths:
239-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]