DreINT0171860 @ danRer10
Intron Retention
Gene
ENSDARG00000033327 | unc5b
Description
unc-5 homolog B (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041213-1]
Coordinates
chr13:29065496-29065987:+
Coord C1 exon
chr13:29065496-29065639
Coord A exon
chr13:29065640-29065883
Coord C2 exon
chr13:29065884-29065987
Length
244 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
GATCTGTTTGTTTTTTTCAGACT
3' ss Score
9.54
Exon sequences
Seq C1 exon
GTCTGGTAGTGAGAGAAGTAGATATCTCTGTCTCCCGGACGCAGGTAGAGGAGTTGTTTGGGCTGGAGGATTATTGGTGCCAGTGTGTTGCCTGGAGCTCGGCAGGCACCACAAAGAGCCGTCGGGCTTACGTCCGCATCGCCT
Seq A exon
GTGAGTTTGTGTTCAGCAGCTTATGTGATCTGTCGGTGTGACGTGCCTTTTAGGCATCAAACTCTGCCTGGAGATGACAGCACCTGAAGAGAACCCTAGTATTTTGAATTTAAAACACTCCCTATTTTTACTTGTGCTATTTTAATCCAGAACACATGAATACATATTTCCATATAATTAAAAAATGGAAACCCTTTTTGGTTGTTTTGGATTTCAAAAAATATGATCTGTTTGTTTTTTTCAG
Seq C2 exon
ACTTGAGAAAGAACTTTGAGCAGGAGCCGCTTGGCAGGGAGGTGCGTCTGGAGCAGGAAGTATTACTGCAGTGTCGTCCACCAGAGGGCAGCCCGCCTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033327:ENSDART00000045951:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0767911=I-set=PU(34.1=88.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTAGTGAGAGAAGTAGATATCT
R:
GGCTGCCCTCTGGTGGAC
Band lengths:
236-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]