BtaINT0157588 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002919 | UNC5CL
Description
unc-5 homolog C (C. elegans)-like [Source:HGNC Symbol;Acc:HGNC:21203]
Coordinates
chr23:14961299-14961668:-
Coord C1 exon
chr23:14961568-14961668
Coord A exon
chr23:14961413-14961567
Coord C2 exon
chr23:14961299-14961412
Length
155 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
CACCCTTTCCTCTACCTCAGGCT
3' ss Score
9.31
Exon sequences
Seq C1 exon
GGCTTGGAGACCAAGTACATGGAAATCCTCAGGTTCCAGGCATCGGAGGAGGAATCCTGGACAGCCCCACCCCCAGTCACCCAGCCACCTGCCTGCAATAG
Seq A exon
GTGAGGTGGGGATTGCTTGGGTTGCTGTAGGGGGTGCAGGATGTTTGGGATTGCTGTTCCTGGGCTTGCAGGGTGAGCACGGCATTGAGGTGTCTGTGGAGCCAGGCTGGGCCTTTTGATTCTCCGCTTCAAGGACACCCTTTCCTCTACCTCAG
Seq C2 exon
GCTGCCCCCAGAGCTCTTTGAGCAGCTGCAGATGTTATTGGAGCCAAACAGCATCACTGGCAATGACTGGCGGCGACTGGCCTCCCACCTGGGGCTCTGCGGTATGAAAATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002919:ENSBTAT00000003791:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(39.7=79.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACCAAGTACATGGAAATCC
R:
CGGATTTTCATACCGCAGAGC
Band lengths:
211-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]