HsaINT0177897 @ hg19
Intron Retention
Gene
ENSG00000124602 | UNC5CL
Description
unc-5 homolog C (C. elegans)-like [Source:HGNC Symbol;Acc:21203]
Coordinates
chr6:40998127-40998494:-
Coord C1 exon
chr6:40998394-40998494
Coord A exon
chr6:40998241-40998393
Coord C2 exon
chr6:40998127-40998240
Length
153 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
3' ss Seq
CACCCTTTTCCCTGCCTAAGGCT
3' ss Score
5.47
Exon sequences
Seq C1 exon
GGCTTGGAGACCAAGTATATGGAAATCCTCAGATTCCAGGCATCAGAGGAGGAATCCTGGGCAGCGCCACCACCTGTTTCCCAGCCGCCCCCATGCAATAG
Seq A exon
GTGAGACGGGGGTTGCTTGGGCTGCTGCCTGGGGGATGTTGGGTTCCTACCCTGGCACCCACAGGGTGACTACAGCATTTAGGGTGCATATGGGAGAACCAGAGTGGGTCTGTTTGTCCCTTTCTTCCAAGAACACCCTTTTCCCTGCCTAAG
Seq C2 exon
GCTGCCCCCAGAGCTCTTTGAGCAGCTGCGGATGTTATTGGAGCCAAACAGCATCACCGGCAATGACTGGCGCAGACTGGCCTCCCACCTGGGGCTTTGCGGCATGAAGATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124602-UNC5CL:NM_173561:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=NA C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(39.7=79.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACCAAGTATATGGAAATCCT
R:
GGATCTTCATGCCGCAAAGCC
Band lengths:
210-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)