HsaINT0177897 @ hg38
Intron Retention
Gene
ENSG00000124602 | UNC5CL
Description
unc-5 family C-terminal like [Source:HGNC Symbol;Acc:HGNC:21203]
Coordinates
chr6:41030388-41030755:-
Coord C1 exon
chr6:41030655-41030755
Coord A exon
chr6:41030502-41030654
Coord C2 exon
chr6:41030388-41030501
Length
153 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
3' ss Seq
CACCCTTTTCCCTGCCTAAGGCT
3' ss Score
5.47
Exon sequences
Seq C1 exon
GGCTTGGAGACCAAGTATATGGAAATCCTCAGATTCCAGGCATCAGAGGAGGAATCCTGGGCAGCGCCACCACCTGTTTCCCAGCCGCCCCCATGCAATAG
Seq A exon
GTGAGACGGGGGTTGCTTGGGCTGCTGCCTGGGGGATGTTGGGTTCCTACCCTGGCACCCACAGGGTGACTACAGCATTTAGGGTGCATATGGGAGAACCAGAGTGGGTCTGTTTGTCCCTTTCTTCCAAGAACACCCTTTTCCCTGCCTAAG
Seq C2 exon
GCTGCCCCCAGAGCTCTTTGAGCAGCTGCGGATGTTATTGGAGCCAAACAGCATCACCGGCAATGACTGGCGCAGACTGGCCTCCCACCTGGGGCTTTGCGGCATGAAGATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124602:ENST00000373164:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=NA C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(39.7=79.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACCAAGTATATGGAAATCCT
R:
GGATCTTCATGCCGCAAAGCC
Band lengths:
210-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains