RnoINT0160632 @ rn6
Intron Retention
Gene
ENSRNOG00000046601 | Unc5cl
Description
unc-5 family C-terminal like [Source:RGD Symbol;Acc:1587368]
Coordinates
chr9:14497711-14499406:-
Coord C1 exon
chr9:14499305-14499406
Coord A exon
chr9:14497792-14499304
Coord C2 exon
chr9:14497711-14497791
Length
1513 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CCCCCTATTCCCTGCCTCAGGCT
3' ss Score
7.54
Exon sequences
Seq C1 exon
GTTGGGAGAATGTGGATGACAGCAGTAGCCAACTGGTTCCCCATCTCCACATCTGGCATGGAAAGTGCCCCTTCCGTTCCTTCTGCTTCCGGAGAAAGTCAG
Seq A exon
GTAGGCCAGGAGCCCCGTTCGATCCTGGTTCTCCCCTCCTAGCCACCCTGCTCTGCAGTCCTCCCCTGAGTCTTTTTCTTGCTCACCCATCTTGCTTCTCTTTGTAGCCAATGGGAATGAAGAGTGCTCGACTTTAACCAATGAGATCATTGTCACCATGCACACCTTCCAGGATGTGAGTTGTGCAGAGGCATAGAGGAAGGGCAGGGCCTTGGAAGGTCTAGGAAGGGGGATGGGTCCGGTACACACTGCATAGGGTCCTAATTACAAAGCAGTGAAAGAGGACGTAGAGCCACCATGCCAGATCTTTGAAGGACTTAGACCGACTGGCCCCCTAGCTATTCTGCATCCCTGCGCCCTTTCTATGGATGGATGAATGCATCAGAAAGTTAAAAAACCCTCGAATCCCGCATTAACTCTTTCTTCCAACTTAGGACCGCTAGGGGGCATCTGGGAGACCTGGTCTCCTCCAAGGTGACCATCTCCATGTCTCTTTGGGGGGTGGGGGGAGACTAGGAAGGAAGGAGGGCTTGACCAAGTTGGGGGGGGGGTAGATATTTTCTCCTCCTTCCCTCTCTCCCTCGCTCCCTCCCGCAGCCTCAGGGAAGAGATGAACAGGTCAGGTTTGAGAGTGTTTGGAAAACCAAAGTAGCATGTTGCAAGATGAAGGCAGGCAGCCAGCCACACCTTGTCATTTGGGGATGAGAGCTGGAGGTCAAGCTCTGTGACTGGGTGGTGGCCTGTGTCTTCTGTGTTCTGCCAGCATAGGATGCACCGTATGCAACTTTATTGTTCTCAGGGGCAAACCTCAGTCTGACTGTAGGGTTCTGCAGTCTGGGAGGCAGAGGATCCAGGGTGCTGGGTAGGGAGGGGGCTGTATCTTCTGGCGACAGGTTGCAAGAGAGTCATGAGGAATGGAGGGGGGCTCGGGGAAGGAGTTTCTCATGACTCCCTGAGTGTGTCCCCGTCCCTGTTGGTGATTCAGGGCTTGGAAACCAAATACATGGAAATCCTCAGATTCCAGGCCTCAGAGGAGGAGACCTGGGCGGTTCCCCCTCCTGTCTCCCAGCCGCCCCTGTGCAACAGGTGAGTAAAGGTGGCTTTGGCTACTGCCTAGGGATGTTCGCCAATCCTGTCTCGGCACCAGTAGGTAGAGAGGATGGGAGAGTGACTGGATCTCTGTGTGTGTACATACGTGTGCGTGTGGTGTGTGCATGTGTGTGTGCATGTGTGTGTGCATGTGCGTGTGTGCGTGCGTGCGTGTGTGTGTGTAAGCACATGGAGGCCAGAGGTGAACCGTGGGTGTTGTTGAGGTAAACATGGAGCTCTAGATAGCCAGCAAACCCCAGAAATCTGCGGGTCTCCTTCTCCTCCTGTGGCTAGGTCACACGTGCGTGCCATCACACTAGACTGTTTATGTGGGTGCTGATTATTGAACTCAGGACCTCGTGACTGTGTGGCAGCCCTTGGGCGTGGAACCTTCCTTCTGTAAACCCCCTATTCCCTGCCTCAG
Seq C2 exon
GCTGCCCCCAGAGCTCTTTGAGCAGCTGCAGATGTTGTTGGAGCCCAGCAGTGTCACTGGGAATGACTGGCGCAAACTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046601:ENSRNOT00000073556:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGAGAATGTGGATGACAGC
R:
GCCAGTTTGCGCCAGTCATTC
Band lengths:
182-1695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]