BtaINT0157603 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010241 | UNC5D
Description
Bos taurus unc-5 homolog D (C. elegans) (UNC5D), mRNA. [Source:RefSeq mRNA;Acc:NM_001192518]
Coordinates
chr27:30993270-30998245:+
Coord C1 exon
chr27:30993270-30993455
Coord A exon
chr27:30993456-30997867
Coord C2 exon
chr27:30997868-30998245
Length
4412 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
GATCCATCTTCTCTGACCAGGTA
3' ss Score
8.72
Exon sequences
Seq C1 exon
GCATCGAGAATGCCAGTGACATCGCTTTGTACTCAGGCTTGGGTGCCGCGGTTGTGGCTGTTGCAGTCCTGGTCATCGGCATCACCCTGTACAGACGCAGCCAGAGTGACTATGGTGTGGACGTCATCGACTCTTCTGCATTGACAGGTGGCTTCCAGACCTTCAACTTCAAAACAGTCCGTCAAG
Seq A exon
GTCAGCGGCGTAGGGCCCCCAACAGCGCGTCCTCAGGACCGTAGACTACACTCACACAGGACCCTCGTGCTCTTTGGTCCTGTGTGAGGGTGGCTCTTGGCACTGGGAGCCGCTCCAAAATTGTCTTCACACCTTAGGACGCCAGGTTTGATGCAGGAGTCTGTCTGAGTTCTTGGCTGCCCTGAGGACCAATGGGTCTCAATTACCTATTGTTGCTTAGTCACTCAGTCATGTCTGTTTTGCGACCCTGTAGACTGTACCCCACCAGGCTCCTCTGTCCATGAGATTTCCCAGGCAAGAATACTGGAGTGGGTTAACATTTCCTTCTCTAGGGGATCTTTCCAAGCCAGGGATTGAACCTGAGTCTCCTGCACTGCAGGCAAATGCTTTACCACTGAGTCACCCAGGAAGCTCCTCGATTTACCATTACCCACATTTTAAATATGGCGTGTCCATCTTTGATATGTAGTCAGTGCCTCAGGTCACCCAACTTTCTATTTTAACCAGCCTGCTTTGGGAATGTATGTTTAGTTAACTAAAATATTGATTATTCAAAGCTACAAACCAATGACTCTAACAGGCATATTTATTACACTATTTATTAGATGGAGTTATTTTATTCAGTGGAGTTATTTCTATTTTAATAAATAAAAGGATTTTAGAGGATGTATGATGGGCTAGTTAACCAGAGAAAAAATGAAATTCTCAGCCTAAATGACTCTCTGCCTTTGCCACCTTGAAGCAGTCTTCTGTTGGAAGGGAAGGAAAATTTATCATGTCAAACAATAGCAGTATTTCATTTTGAAAACAGAAGAGTCATTTGATTTTCTTCTACCAACTAACTCTGTTCCTGATTGGGAGACGGAGATGAGACATAAATGGCTTTTATTTTAGAAAAAATGGAACCGTCTCATTTCCATAGATGAAGTTTTCTACTTTGACCCTTGTGATCAATATTGTCACTTTTATTTCTGTTTATTGCTTGTGAGTAACACCTACAGTACAGGACAAGAAATCTTACTGCTTGGCAGTGATGGAGTAGGGATAGGATGGTGCAGTGGAAAGCCAAGCAGGCTAGGATGGGGAGATGGTGGGAGACACAAGCGACTTGACTGCTTACCACTCACTTCTGACACCTGGTGGCTCAGATGGTAAAGAATCTACCTTCTATGTGGGGGACCCGGTTTCCATCCCTGGGTTGGGAAGATCCCCTGGAGAAGGGCATAGCAACCCACTCCAGTATTCTTGCCTGGGGAATCTCACGGACAGAGGAGCCTGGGGGGCTACAGTGAATGGGGTCCCAAGAGTCGGATACGACTGAGCAACTAACACTTTGACGTTCTGGCACCTTGGCTTCTGGTCTAAGTCTGGTTGATCTCAGATAAAAACATGTCACCTCAATGTACTAAGCTTATGTGACTTAGTACATGTGACTGATTTTGGCTGTGCTGGGTCTTCACTGCTGTGTGCAGACTTCTCTTCTAGTTGTGGCAAGTGGGGCTACTCTAAAGTCGTGGTGCCCAAGCTTCTCACTGCGGTGGCTTCTCTTGTGGCAGAGCATGGGCTCTAGGGTCTTCCAGCTTCAGTAACTGCCGCGCCCGGGCTCTAGAGCACAGACTCAATAGTTACAGCGCACAGGCTTAATTGTTCTACAACATGTGGGATTTTCCCAGACCAGGGATCAGACTCCTGTCTCCTGCATTGGCAGGCAGATTCTTTACCACTGAGCCACCAGGGAAGTTCAGTATATATGATTTAATTAGAAGTATATCCAGTGAACTAGTGGCTCAGACGATAAAGCGTCTGCCTGCAGTGCAGGAGACCCGGGTTCGATCCCTGGGGTGGGAAGATCCCCTGGAGAAGGAATGGCAACCCTCTCCAGTACTCTTGCCTGGAAAATTCCGTGGACTAAGGAGCCTGGTAGGCTATAGTCCATGGGGTTGCAAAGAGTCAGACACGACTGAGCGACTTCACTTCACTTCATCCAAGGAACTAGTCTTGCGACTGTGTAAGAAACTAAAATTGTATCTCCATCAAATCATAAGATATCACTGTCTCAGACCTTACCAGTTAAAAACAGAATACACAGTAGGGTGGGTGGCAGCTTTGTGTGTAAATTCAGAGGCTCTGAAATCAGATTTGAATCCAAAATTGCTGTAAAACCTAGTAAATCAGTTATTCTGTCTGTCTCAATTTTTCCAGCTGTAAAATGGACATACTAACATCTATCTCAGGGGGGCCTTGTGAGGGTGAAACCGCCTGGAATAACCTGGCTTATAATACCTTGGCTTAAGGTACTCAGTCAATGTAGAGCACATCCTTCTAGAAGCTGGCTGTCTCCTCATACCTTGACAGAGGACACCAGTGAGTTCCGCAGAGCAGCAGGTGGTGGGTGAGAGGGGCGGTTCCCTGATCGGAGCATCTGGGGAAGGCTGACTTGGATAAGCTGATACATCTTATTACCATGAGGCATCTCAGAATGTAGGAAACTTATACTGTGACTCTCTCAGAGAGTATGTAGCCTTTCCAAACTTATTTTTACCATTTTCTTTAACCAAGAACTCACAAAACTAGTGATACCAACAGAAGCCCCTTATCCAAATTCTACTCTCCCCTGCATTCACGGTGAGGCTATGCCTTACATGGGTGCTCTGTTGTCTTCATGACATCCCTTCTTGAGCAAATATGATTGGAGCCCCAGCAGGGTGAACAGTGAGATTTAATAGAATGTCAGAGAGTAGACCAGGGCCTTGAAAAGGACATCCAAAGAGAAACTTGCGGTCACTGGGGAATTATCTTCAGTCAGACTTAAATCAAGTTGGCCACCAACTTTATATGTGTATGTGTGTGTGTATTTTTCATATATATACACATACACAAACATACACATATGTATGTGTGTATAGTGATAGGCAATTAAGACTTAAGTCTAACTCTAGGAAATGTTTTTGCTTCTTGACTTTACATAAGATAGCAGGGTCTTCTAACAGTAGCCAGAAATTAAACGTTAGAAGGTGAGGACGTGAGAGAAAACAGCCATGAGACAAGAGAGATGCTTTTTCAGGCACCAGTGGAAACCCCTGCTCCAAACTTTTCAGATGTGAGATGGTTCTTCCATCCTGCTTCTTGCTTCATAACCCAGAGTAAGGCTGGTATCTGTAAAGTTTAGTGCAGTTCTGTTAAAAAGCTCAGCTCCTTATAATATAAAAAGATCCTCAAACATGGAAAAATGCCTCATCAAGGTGCTTTTACATCTATAAGGTATTTCATCTCATTTTGAACCTGCTCCTCTGTGATTTGGGATTCTTAGAGCGTCAGAACAAAGAGGTGGGAAAAGTCAGGGTTATAGATTTCCTGCTGGTGTTGTTACAAATTATGAAAATGGAAAAACAATAGAAGCTAATAGGATATGGTCTGAAATGGCAACATTTTCCAAAATATCACATGCGAAACATTTTTGTCAGGCCCCAAAGGAAAATGGTTTAATGTGTTTTGGGTTTCAATTTGAGATGTCACATTGATGGACTGATATGGGCAGGAAGTTTGGAACTGAGGGTTATTTTGTTATTTACTAATAAATGAGATTACTTCATCACAAGAAAATATCACAGCATTTCTTTTTAATATTTGGGCATAGAAAAAAAATGGTTATGTCCCAGCCGATGAGAAAGTCCAATTTCTCATGTTTTTGTAAGGATTATTTTTCTCCATTTGTTTTGAGTCAGAAAGAAACCATTCTCAGCTGCTCCCCTTGTGGAAGCTGGGATCCTCTGTGCCTCTCAGAGTGACATTCATGTTATCAGAGTGAATTGGCTGCTCAGACATGGAGCAGCTCGTGAAGCCCCCTGACCCTTTTGCTCTGAGGACACATTTCCTCCCCCAGAAACTGCCCAGAATTCCATGGGAGACGTGTTGGCACCCACGCCACCTCGGTTATAAACAGCACCACCTCGTCACCATGCTGTGTCATCTCTTTGCCATTTAAACTGAACAGATGTTATTTTTGCTCCAAACTGGATTGAAAAACATCTTTCTTTCCTCTTTTATTTTTTTAGAAGCTCCTCTTTGCCAGTTAAAATAATCCCGTAAACAATCATACCTGAGTAAGTTGCCTGGTGGAGTGCCAGAAATAATTGTTTTGAAAGGATAGCACATAAAGAGCTCGAGAAAAGGATGAGTTAGATCGGCACCATTCGGGAAATTGACTGCAAAAGCCAGAGCTCCTGATTCCGAGGCTCTGGACACTATTGATCAGCCTGTTAGAGACACTTTAGATGCCCAGGGCGGGTCTGAGGGGTCAGCCGTGACCCGGGCGGCTGGTGAGCACGTGCAGCGTAGTTTGTAGAAGCATGTGAAGGAGTAACTATGGTGCTTTACAGCTTCTGAGTGACAGATCCATCTTCTCTGACCAG
Seq C2 exon
GTAACTCCCTGCTCTTGAACCCCTCCATGCAACCGGACCTGACAGTGAGCCGAACGTACAGTGGGCCCATCTGTCTACAGGACCCCCTGGACAAGGAGCTCATGACGGAGTCCTCACTCTTTAACCCTTTGTCGGACATCAAAGTCAAAGTGCAGAGCTCGTTCATGGTCTCCCTGGGAGTGTCCGAGCGAGCCGAGTACCACGGCAAGAATCATTCCGGGACTTTCCCCCACGGAAACAACCGCAGCTTCACGACAGTGCATGCCAGAAATAAGACGCCCTACATCCAGAACTTGTCATCACTCCCTACACGGACCGAGCTGAGGACCACGGGTGTCTTTGGCCATTTGGGAGGACGCTTAGTAATGCCAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010241:ENSBTAT00000039849:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.228
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0079115=ZU5=PU(20.6=16.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]