MmuINT0170622 @ mm10
Intron Retention
Gene
ENSMUSG00000063626 | Unc5d
Description
unc-5 netrin receptor D [Source:MGI Symbol;Acc:MGI:2389364]
Coordinates
chr8:28719617-28724406:-
Coord C1 exon
chr8:28724221-28724406
Coord A exon
chr8:28719995-28724220
Coord C2 exon
chr8:28719617-28719994
Length
4226 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
TCATCTTTTTTTCTTACTAGGAA
3' ss Score
10.69
Exon sequences
Seq C1 exon
GCATTGAGAATGCCAGCGACATTGCTTTGTACTCCGGCTTGGGTGCAGCCGTGGTAGCTGTTGCGGTCCTGGTCATTGGTGTCACCCTCTACAGACGGAGCCACAGTGACTACGGAGTGGATGTCATTGACTCTTCTGCATTGACAGGTGGCTTCCAGACCTTCAACTTCAAAACAGTTCGTCAAG
Seq A exon
GTCAGCGGCATAGGTCCCCCAACACCTCATCCTTAGGACCACTGGCTGCACTTACACAGGTGTCCTCCGTGTTCTTGATACTGTGCAGAGGTAGCTTGTGGTCCTGGGAGCCGCTACCAAATTGTTTCCATTCATTAACACACCATATTTGATAAAATGATTTTCTTGGTCCTCAGCAACTGTGAGGATGTATGGGTCTCAATTTATTATTGGCAACATCCAATGAAATAGTTCAACATTTGATACAGAGCACTCCTCTCAAATTATCCAACTTCATCTTTGAAGAACCCTAGTTTTAGTTTATGTGTTTAATTTTATTAACTAAGATACTGAGTACTAAAAACTGAGGACACAGCCCCAGAACAAAACTACCCAAAACCTTTATTACACTGGTTTTTAAAATTTCTTTAATTTCAAATAAATAAAAAGGGTTTAGATGATATCGGAGGGATCAGGTATGTGAGGACAAAATGAAATACCAGCCTAAATTACTTTCAGCTATTGCCAAGGCTGACCAATCTTTTGTTGTGGAGAAAGAAACATTTTTCATGTCAAGGCACAGAGATGCTCTTTTTCAGAACAGAGAGAGTCATTTAATCCTCTATTATGAAGCAAACCTATCCCTGAATACAAGGTGGGGATGAGACACATTTGGTTTTAATATTATGAAAAAAGTAACTGTCTCTCTTCAAAGGATGAAGTTTTGGACCGTTACCCTCATTTTCTATAATGTCCCCTTTATTTCTATTCATTGTATAGATATCACCTATTCTAAAGGCTAGACAGTTTCTGCACTCAGCATTTATTGGGTAGACAGATTGCTGAAGTAGAAGCCCAAACCTGCTAGAACAAGCAACTGAGATAAAGCTTAGAGAATAGGCTTCTCCCCTTGGCTTTTATTTTTGGGTACCTTGGTGTTAAGCCATTATTTTTAAGCCACTATTGTGTACAAGTTCACCTGCTTTGAAGTCAGTTACGTTAGAATATGAAACCGCTATGAAGCAAAACAGTTATTCTGAGTCACCATTTCACAACTATAAAACAGGAATGCTAACATCCTCCTCATGGTGTTCTTGTGAAAATGAATATGCTGAGACTAACCTGGGGAAGCCCTTGGCATTTGAGGAGAGCTCATTCTCTCAAGATAGCTCTAGATGCTCACGTGTCCTCTAACCATGGGACAGCAGCATGCTCTGTGGAGCAGCAGGCAATGAATATGAGAGGGAGGTAGTTGCCTGGCCTGAATACGTTTGGGCGACAGTGATTTACATAGATTGGCCAATGTCCTCATGGAGGAGTGATTCAGAACATCAGTATATTGCGAATCTCTAAAAAGAAATCATCTTATCAGATCGTCTGACCATTCTGTTTATTTTTGGCTAAGAATCTCATAAATCTCAGGATAGAAGACAAAAACTCTTTTGTTAACTGCTACCATCCCCATATCCATTGCCAATGAATCTCATTTTTATAGACTGTGACTTTGACCTCCACTGTCTTCAAGGTGATAGCTTGATGAACAACATGTCCGGTACCCCAAGAAGGGGAACAGCAAGAATGTTAAGCAGAATTTTGTCCTAGTTTTCTTTCTGTAATGAAATTGTAATTAAATACCCCCCCCAAGAGAAAGTTAAGGGAAAGATAGTTTATTTGGTTTACAATTGCAGATGGTAGCCCATCATTGCTGGGAAGTCAAGGTTGATATTTGAAGCAGCTAGCCACAGGCATCACGGTCTATATCAGAGAAAATGAATGCTTATGCTTTTACTTGTTCTCAGCTCACATTCTCTGCTTGTACATAGTTCAACACCCAGGGAACGATGTTGCTTTAGAAGGCAGCTTCTTCCCATATCACTTAATATAACCAAGACAATTCTCCACAGACGTGATGGAAGGCCAATCTGATTTTGATAATCCCTTATGCCAGGAGATTCACGCTGAGCCAAGTTGACAGTTAAATTAAAACTAACCATCGAAATCATCTTGGGTATGGTAGATGTAGACGACTTGTTCCACAAGTGTAAAGCCCTTGGGTTCAATAGATAAGAAGATAGAAGGGAGGGATGGAAGAAAGATAAAAAGTCAGGCATATGGAAAGAATACAATGCTTAGGTTAAATGAGGAAAATTGTTTTTTAAAGAGAAGGGAGGGGTAACAAGACAGCAGGAAGAATAGCTGGCCTTAATCAGGCTTCGGTCAGGTTGGCAACCAACACTTTCAACTATAGACTTATACATTTGAGTGTGTATATGTGTGTGCTTTCCCTGTGTGCTTTTCTATGTCTGTCTGTCTGTCTATCTCCACTCTCTCTTCTCTCTTCCCTCTCTCCCCTCATGTGTGTGTATATTTTCTCTGTCTCTGACTTTCTCCCTGTCATCTCTGTTCTGCCTCTGTTTCTGTCTCTTTGTGTGTTTTTCCTTTTTGTTTTCTGTCTGTCTGTCCCTCTCTCTTTTTCTCCCTCCTCTGTCTGTCTCTGTCTCTCTTTTAATTTCTCTGTCTCTCTCTACCTTTGGCTCTCTGTTTCTGTCTGTCTCTTTCTCTATCTCCCTGTCTCTCTGTCTAGCTCTCTGTCTGTCTGTCTGTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGCATCTGGGTATTTTCCATGTCTGTGCTAAGTATCAGAAATATTTTCCCCCATATGCTAAGCAAGTCTTTCAAAAGTAGCCAAAAATTAAGATATGAGTTTTTGAAGTCTCCATGGAAACTGCTATTTCAAACTGTTTTCAAATGTGCTGTGTTCTTTAGTCCTCCTTTTTTCCTGTGGAAGACCACAGACAGGAGCAAGGTTATCATCTATTGAACTCTGTGTGGTCCTGTTAAAAAAGACTGCTTGATGGTGGCTGCATCTTAGCACAACAGCCCCTAGATGGAAAAGGGGCAACATCAAAGGGCCATTATAGTTGCATTATCTTTTTGTGTATTTTCTCTGTGATTCTTGATTCTTAGCCTATCCCAACAAGGGGTGAGAAAATCCACAGTGATGGCTCCCCTCATGGCACTGTTACAAATTGGGAAAATAGACAAACAATAGAGACTAATACAATACAACCTAGAATTGAAGCATTTTCAAAAATACCACATTTAAAACATGTTTTTTTTGGTCAGGTCCCAAAAGAATATTGCTTAATATGATTTGGGTTTCTACTTGAGCTGTCATATTGACGAACTGGTAAGGGTGGGAGGCTGGGGAGTGAGGGTTATTCTGTTATTTACTAATAAATGCGATTACTTCATCACGAGAAAAATATCACAGCCTTTTTAATATCTGGCTTGGAAAAAAAATGGTGAGCCCAGCAGATGACTAGAGCACTGTCCAATTTCTGCTGTGTTGTGTGAAGACTGTTTTGTTCATTTTTTTTTAAACCAGCAAGGTACCTCCTTTCTGAGATGCTCCCACTTGCAATCCAAGCCACTCTCTGCTGCAGCATTCTTTCCCTCACAGAGTGACATCTGTGATGTTCAAGTACATTGGCCCCTCAGACTTAGAGTGATTCATAAGTCCCCTGAACTATTTGCTCCAAAGCATGCTTGCTCCCCCGGCTCCAGGAGCTGCTTAGAATTTTACAAGGAATTTTCCACCTCCTCTGTGGGCTCTTGTCTGCAGCACCAAGAGTCACTACACGGTAGCATCTCTTGCTATTTAAAAGGAACAGATGTTATTTTGCTCCTAACTGGGTTGCAAAACATCTTTCTGGTTTTTGTTTTTTTTTTTTTTCCTTTCCTTTTCTTTTTTAACTTTTCTTTGCCAGTTAAGATAATCACACAAACACTACCTGAGGCAAGTGGCCCTAATCCAGTGTCAGACATGTTTGTCTTGAAAAGGAGGCATGTCAAGAGTGTTAGATGTGAGGGCAGTGAGGGCATGATATTCAGAAACTGACCTGGAAGGTCAGAGGTCCCCATTCCCAGCCACTGGCATGGTTCCACCTAGGTTAGCAGGGGAAGCTAATACCAATCAGTACATCCAACGCCAATACAAGATGTTCTCCTTTTAATAGAGGCAACTGCAAAAAGAGTGATGGAGGTGTCTTTTAGTGTCTGAGTGACAGATCATCTTTTTTTCTTACTAG
Seq C2 exon
GAAATTCTCTACTACTGAATCCTGCCATGCAGCCAGATCTGACTGTGAGCCGGACATACAGCGGGCCCATCTGTCTGCAGGATCCGCTCGACAAGGAGCTCATGACAGAGTCCTCACTCTTCAATCCTTTATCTGACATCAAAGTCAAAGTCCAGAGCTCATTTATGGTTTCCCTGGGAGTGTCTGAGAGAGCGGAGTACCATGGCAAGAATCACTCGGGGACTTTCCCCCATGGAAACAACCGCGGATTCAGTACAATACATCCCAGAAACAAAACGCCGTACATCCAAAATCTGTCATCACTGCCGACAAGGACAGAGCTGAGGACAACTGGTGTCTTTGGCCATTTAGGGGGACGCTTAGTAATGCCAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063626:ENSMUST00000168630:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.241
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0079115=ZU5=PU(20.6=16.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types