GgaINT0136164 @ galGal3
Intron Retention
Gene
ENSGALG00000001608 | UNC5D
Description
NA
Coordinates
chr22:1902681-1904697:+
Coord C1 exon
chr22:1902681-1902866
Coord A exon
chr22:1902867-1904319
Coord C2 exon
chr22:1904320-1904697
Length
1453 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
GATCCACTTCATTTCACCAGGTA
3' ss Score
7.59
Exon sequences
Seq C1 exon
ATATAGAGACAGCCAGTGACATTGCCCTGTACTCCGGCCTGGGAGCAGCAGTCATTGCTGTAGCTGTGCTGGTGGTTGGTGTTACCCTTTACAGACGGAGTCAGAGTGAGTACGGCGTGGATGTGATTGATTCATCTGCACTGACAGGAGGCTTCCAGACATTTAATTTTAAAACAGTCAGACAAG
Seq A exon
GTTAGTGTTGTGATTTCATTTTCTTCTCTCCAGAGCCCCTTCTACACAGAGATACTAAGCTCATATGCGATGGCTGGCTGCAGGAGGGCATTCCAGCCTAATGCCTAGCAGACACATCTGGAGCCAGGGAAGGGCAGACCTGGTACATGGAGTGGGATGTGGGGGTTTGAACCATGATATAGTCTCTGCTACTGATTTGTCACAGCAACTTGGACATACAGTCTTTCTTGACCACGCTCTAAGCGCTTCAGAAATAGTCATTAGATTCTATGCTGATGTTTGTGACTCTCATAGGAAGTTTTCTGAGCTAGAATGCTCCTGGATAGACGGCTGTGAGAAAAAGTTCTGCCCAACGGGTTGTAATTAAAAACAAAAGCATGCACACAGAACCAAATCCAAAACAAAACAGAAGTTCCTTCATGGATTTATGCATGTTGGAATTGCCTGAAGTGCAAAATACAGTGATCAGGTACCTGATGGATCTTCTGCATGGTTTCATCTTGGTCTCAACATCACCCTCTCTGACTTTAAGGTGTGAGGCTGCCAGGGAAGAAGAGCAAATCAAAAAGGAAATGATGGTGAGGTCAGGAAGAGATGTCTGAGACAAGGAATTAAAGCTCAGTTATGTAAATTTCCAGTGCTTACTTTGGTACTTTTCTTTTATATTGCATAGAACAGAGTGAGGAGAGCTTTTACTCTCCAAATACAATTATTTTTCCCAGGGCTGCAGTATGTGCTGAGTGCATCAAACAAGTTAGTATTAGATGCACATCAGCTACATCTCTTAAGTCTTACCTGTCTAGCTCCAATTTATAGATGGGGAAATCAAAGTGCAGCTGAGTACTGCTTAGGATTTACAAATGCTTCTAATGGTTCACTGAAAGTGACAGTGAAATACAAGCCTGACTTTTTATTTGCAGGCAGCTCTCGAGCGCAGAGTGATTTAAGCTCCAGACATTGCTAAGGAGGGAGGAATTAGCTGCAGCATGCCTGGCAGCACAGTGCAGGCTGGAACTTGGTCTGGGCTAATGGGCACTGAGGCAGGTGTGCATGGAATATCATACAGTATATAAACAGCTCCAGTGCTGTTTAATGAAAAAAACACAACACCGCCAATCACGGTACATGAATCAGATATGAGTCATGGCTCTTAGGCTACTTAAACCCATACATCTATTATTTTTCACTTCTCAATGTAAATGCAGCTCTTGTAACCTGAGGACATAGTTAAAATCAAAGAGATTTATTCATTTCAGGATTGTAACTTGTATTAGTGCATGATTAGGAATGCGGTCCAGGATTCCAAATTCATACAGCACTTCTCTGTGCCTTATGAAGATCCACATACAAGGGATGGAATGCTTCCTCGATGTGTTATCTAGGTGCATTATTCAGCTTCACTGCACACTCTACAATACAGTAACTAACTGCCTGATCCACTTCATTTCACCAG
Seq C2 exon
GTAACTCCCTGCTTTTGAATTCATCCATGCAGCCTGACTTGACAGTGAGCAGAACGTACAGTGGACCAATCTGCCTGCAGGATCCAATGGACAAGGAGCTAATGACAGAGTCTTCGCTGTTCAACCCGCTGTCAGACATCAAAGTCAAAGTTCAGAGTTCGTTCATGGTTTCTCTGGGGGTGACAGAGAGGGCTGAATATCACGGAAAGGCACATTCTGGAACTTTTCCTCATGGGAATGCTAGAGGTTTTGGAACAATACAGGCTAGAAACAAGGCTGCATACATTCAGAACCTGTCTTCTATTTCAACAAGAAATGAACTGAAGACAACTGCCATCTTTGGGCACCTGGGTGGTCGTTTAGTGGTTCCAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001608:ENSGALT00000002447:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.055
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0079115=ZU5=PU(20.6=16.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACATTGCCCTGTACTCCG
R:
CCCCCAGAGAAACCATGAACG
Band lengths:
351-1804
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]