BtaINT0158975 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019488 | USP6NL
Description
USP6 N-terminal like [Source:HGNC Symbol;Acc:HGNC:16858]
Coordinates
chr13:12778211-12782122:+
Coord C1 exon
chr13:12778211-12778265
Coord A exon
chr13:12778266-12782054
Coord C2 exon
chr13:12782055-12782122
Length
3789 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
3' ss Seq
GAAATTTGGTCTCTCCACAGATT
3' ss Score
9.47
Exon sequences
Seq C1 exon
ATGAGGACTGAAGCTGTTGTTAATTCCCAGGGCCAGACTGGTTATCTAACAAAGG
Seq A exon
GTAAAGTACTTTTTATGTTAAAATATATATTTATTTAACATTCATCTGTCAAAATGTATACTAGGAAAAATGGTCTGTCAATTTTGTGTCATTGGATTGAATTTAAAATTTAAAACCTTTGAGTGAATTGTTCATTACAGTCTGGGGCTATTACAGTTCAGGTGGATGCTTGATTCTTAAAAGTTCTTATGATTACATGGAATTAGAGGTGTTCTTAAAATGCTGTCGTTATTTTCTTCTGTACACTTGTGCCCCGAGATGTTTTATATGTACTTGAGTTTTTAATCCAAATGTCTTTCGATCTTTAACTGCTTAAAATGTGCCTCTTATACTTTGAGACGTTCTTATATTAGATGGAAAGTCAATTAGAGTAATTTGTTTGCATTTGAGCTGACTACTCTGGTAGTTCTGTTGTTTGATGACTGGTGGTGTAAGTGCCCGGGACCACTGCTGCTGTTTAATGGTCGCCTGAAGTCGGGGCACACTTGCAGGCACAAGACGGCTGCCGTGCCCTCTGTGGTCAGTGTTTTTAGGGCAAACTCTTTGTTCTGCAGTGGAATTTCTAAATAAGCAATCAGAACAAAACCATAGGGATTATTCTATTATAATTCTTAATAAACTTCTCAACTGTAGATAAGACAGTGTGCAGCATAATTTAACTTCAGTGAATTCTGCATAAGGACACTACTTTCTGGAAAGATGATTGCCTTAAATGATGTCTCTAAACTGAGTGTCGGGAAAGATTGGCATTTCCATTTAGTCTCTTCAAAGAAGCAGGTTTGGCTATATTTTATAAGATAAGTTTGACTTTAAATCTGTTCTCTTTTACATTTATTAATACCACAGATTTTTCTCCTCATGGGGAAATAACAAGAGCTTTCTAAAGGAATTTAAGACTAGCACTTACTTGATTCAGAATCAGCTGCGCTAATCATTTTGGTCATTTTTCTTTCATAACATTAGAGCACAGCTTCATCCAGTTCCAGTACAGCCTCTATTATTGGCTAGGTTTTCCTTTCTAGAAATTTCTAGACTGGAGATGGATCCATGTAAAGCATAGTATCTTACAGCCACAAAGATGTTTTCTTGGGATATTTTGTATCTTCATTTCCCAGCTCTATACTGTTCCCAGTTCTTACCTTTATACTTTTATTAAACTTTTCATTGTTAAGCTAGAAATATAGTTGAGATTCCTAGGACTAGTAGCAGAAATAAGGGACTGGTATAAAATACTTCCGAGAAAGCCCTCATTTATTGAATTTTGCCCAGTCACCATAGAAATTCATGCTTAGCTGTTCTGATAATGGAAATGGAATTTACTGTGTGGTCAGGGTTCCTAGTTTGAGTTTATTTTCTGTTCATTTGCTTCCCCTGCCCTTTTGGTGGGTATATGAATGCAATGGGTTAAAACTGGGTAAAGGAAGAAGGAGAAAGGAGTTGAGGAAGGTTCCTAAGTCTAAAATAAGATAATTCATATGTGTATAATTGAGCTGAGTATCCCAGACTTCTGAGTGCATCCTGTGTGTGCCAAGTCGCTTCAGTCATATCCAACTCTTTGCGACCCTATGGGCTTAGCTGGCCAGGCTTCTCTGCCCATAGGATTCTCCAGGGAAGAATACTGGAGTGGGTTGCCATGCCCTCCTTCAGGGGATCTTCTTGACCCAGGGATCAAACCTGCATCTCTTAGGTCTCCTGCACTGGCAGGTGGATTCTTTACCACTGGTGCCACCTGGGATGCATTAGTTTACTGAAAAGCATTTTATTGGACCATTGTGTTATTTATTCACATTTCCCGCAAAGGTTCTCAATTGACACTTTGAGAAAAGCGGTGGCATAAACACTTTTTCCCCCAAATAAGCTTTAAGAAATTGACAGATTTCTGTTTTGCTGTTTTTACTATTAAAAACAACCTTGTGATTATCTCCTTGTCATAAATTCCTAGAGGTGGAACTGTTGGGTAAAGGAGATGCCTGTTTTGAAGATTTTTGATATGTTTTATCAGGATGCTTTCCAGAAAGAGTTGATACATTTGTGAGTCCACCGAGTGTCAGTGAGGGCACATCGCCCCACACTGTATCGAGACTGAGTAATATTGGTGCGTTTTGGGGTCAGTCTGAGATAGGTGCAAAGTGGTATTTTAAAACTTGCATTTCTTTAGTTTCTAATGACTTGATTCCCCCTGGCCCCGCCCTGCATGTCTTGGCTTTTAAAATTAGCTTTTATTTTTGTCAGAACTTTACTTGGTGTAAAGATTTAGGATCTGTAAAACTTACTTTGAAAAATAAGCTCACTTCCACACGCTTCCCCACCAGGCTGCCCACCCATAGAAGTAACTGCTCTCCAGTCCCAGCTGATTGATTTTCTATTTACTTCCAAAGCACTAGATAACATGCCTATATTACCACTTCCTGTTCTGCAGATTTAGTCATTATCTCATGATTTCCTGCTTTGGAGGGCGAGGATGGCTTCCCCGCACTCAGCCTCTTACATACACACATGCCTCCCTTCAACTCTTAGGAACTTGGCTCCTTCAGTCAACTACTTGTTTTCAACCCCACCCTCACCTCTTTGGAACCTCCATTGCTGTGCCCCTGAGGGCCAGGATTTAAAGAACCCCATGTTGTCAGTTTAGTGGGGTTTTAGGAGGAATGGATATAAAAGTGTGTGTCCCATCTGCCATATTTCACTGGACATCCTTTTTTGTGTCTTTCAGTGATCATTTAATAGAGTAATGGTTAAAATTATGGGCTGTAGATTCAATATCCTCTGAATCCTATCGTTGCTGTTTACTAGCTGTGTGACCTTAGACAAGTCGGTTAAAATCTTTAAACCCTGTTTTTTGTTTTCTTTTTTTTTTTCATCTGTGTAATAGAATTACCAGGATAAAGCCCGGACTTAAGTGTGATAAGGCATGTAAGATCACTGCTGGCGGGATCTTACTGCCTGCCGGGCGCTTCCTGGGAACAGGTTTGTCTCTGCTGTTGTTGCTTCTGTGAGTGTCTTGCTCATGACCTTTGCCCAGTTTCCACTGGAATGCTTGTTTTCCGTCTTGACCAGAGGTGCCTTTTATATATAGCCAGTCATTGATCTTTTAATTTATGGGACTTGGGTGTGTAATCATATCCATACTATTTCATATTTTGATCTCTAATCATTGTCAGACTTACGTTTTTGAAAGATAACATGATGGGTAATGAGAAAGAAGGGTGTGTGTTGTGGTAAAACTGCACATTATGATAATAGTTGGGACAGTTGATAAGGGGGACCTCAGGCTAAATGTAAAGAAATGATTATATTCATCATGTCAGAGAAATATATTTTTAAAACCCTTAAACTCTATCTTGCATTAGTTTATTTTGTGAGTAAATTACCTAAATTTTTAAAAGCCTTCTTGAATGCTCTTCTCATCACCTACCCAAGTGGATTTCATCTGAAAACTTAGAACTCTCATTTCCAGTTTCTACTTTAATTCTTATTTCTGTGAAATTAGATCCAAATATAACTCTTGAGGGATAAGATTTACATATCCCCTAACTTAATGCTGTGTTAACAGATTTGCTTTCTTTTGAGGGTGGTATGTAACATCAAAATAGTAGATATGTAGATATTTCAAAGTTGTAGTTATGGATACTTAACTCACCCTTGTAAGTTTATTTGATTTTTGCTGATTTGTCATTTTAGGCAGCATCAATTTATTGTTTTATTTTCACTTGTTTTGTCTTAGTTTTATGATTAATTAATTTTATAAATCTTTAAACAACAGTTCACTGAAATTTGGTCTCTCCACAG
Seq C2 exon
ATTCAAACCAGGATGTAGCACTTAAACTTGCCCAGGAGCGAGCCGAAATAGTTGCTAAATATGACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019488:ENSBTAT00000025957:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development