BtaINT0159603 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014906 | VCAN
Description
versican [Source:HGNC Symbol;Acc:HGNC:2464]
Coordinates
chr7:85678235-85684901:+
Coord C1 exon
chr7:85678235-85678310
Coord A exon
chr7:85678311-85684523
Coord C2 exon
chr7:85684524-85684901
Length
6213 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTATTTTCTTTTTCTTGTAGTCA
3' ss Score
8.08
Exon sequences
Seq C1 exon
GACAAGATGCTGATAAATATAAAGAGCATCTTATGGATGTGCTCCACCTTAATAGCAGCCCATGCACTACAGAAAG
Seq A exon
GTGAGTGTGGTAATCATTTTTTAGGACTAATTGAAATAAAAATTAAAGTATTGGGGCATGGAATGTGATTATGGAATCATTAAAATAAAGGATGAATTTTTTATTTATTCGTTGCTGAAGACTTTTAGCTAAAATATCATTAGGCTGAAAACAGTGGTTTTAAATAAATCAGTTATAACAAAATAATGAACAGGATGCTAAAGAAGAAAGTGGGCTTTCAGTAACTTACCAGATTACTTTCAGACTGCGCAAAAAGGCTCATTTGAGTGGCTGGGCATATTTTAAGGTTCCACTCTTTTTGACACCACTCAAAGGCTTTTCTACATTGAAAAAAAGACTATTGAGCTTTCAGAGGGATACAATTTGAAAGAAATCAATAAGATATAGATAGACAAGATAACTGATAGACAAGTTTTTACCCCTACCTCCATTTCTTTCTTTTTCTCTTTTCTTCTCTCTCTCTCTTTCTCCTTTGTAACTGGATAAGTAAACATGCACTGTTTTCTTAGCTTTAAATTATATGTCCGCCTAATGAGAGTTTTGTGATTCCAAATTTGTAGATTCTTGGTCCATGAAGAAAGAATCTGTGCTGAGTATCAGTGACCTGCTCCCATCAAGGGTCTCTCTAGACTCAGCTTCTGCTTCTTTCTCACACTCACTGCCTGCTACAGAGTCTGAAATAATTTATAATTTCCATTCTTATTCCCTATTTTTTTCCTTACACCTTGTTTCCCTTCCCCTGCCCCAATGCAGTTCCTTCTGCTTAGCAGTGCCTTCTTTTGTCCTCTACAGTTCCACTTCAGTTCATTCTTAAGATTCAGAACTTGTGTCACTCAACCTATTTATTCATCCATCCTTCCTATCCATCCATTTATCTATCCATTGACAGTATTGTTTGAACAGATTCTACGTGCTATGGCTTAGTCTGGGTCTCCAGGGATATATCAGTGGATGAGTCATACATTGTTTTAGATTTCATTAAGCCTAATCTCCTTAGTTACATGAGGTAGGCAATAAACATGTAAACCAACAATCCCAGTACTTCTGAACTGATGAAAATAAAGCAGAGTGACGACCTAGAAAGTGTCTTAGGGTGGGGGCAGGGGAGGTGGTAAGGCGTCTTTGAGAAAGTAATCCTTAACACTGACGTGGGAATGACGAGAAGGAGCCAGCCAGCTAAGATCTGGCCCAAGTTAGGTAGTGTGTTTGAGCAATAGAAAGGTCACTGCAGTTGGAGAGCAGTGATCAAGGGAAAAGTAGGAGATCTAGATAGAGAGATAGGCAGAAATCAGCTCATGTAAATAGAAACACTATCTGACACTCAGAAAAGAGCTTCCTATGTTTATTTTTCTGCTGCACCCCCATGTCTCTATTTCTACTTTGCAAATCTGGGTGGACACCAAGGGGGTGGCATGAATTGGGAGATTGGGACCAATATATACACACTACCATGTATAAAATGGATAACTCATGAGAAGCCTCTGTAAAGCATAGAGAATTCCACTCAATGCTCTGTGATGACCTCAACAGAGAGGAAATCCAAAAGAGAGCAGATATGTGTATAGGAGTAACTGATTCACTTTTCAGCAGAAACTAACACAACATTGTAAAGCAACTATACACAAATTATTATTATTTTTTTTTAAGAAGGAGCTTCCTATGAGCCAGGAACAGTTTTAATACTTAACATTAGCTTATTGAAACATTCACTATCCATAGAGGAAACTGAGATCCAGAGAACCTAAGTGACTTGCTCAAAGTCACAAGACTAGTAAGTAGCAGAACTGGGAGAAGAACCAAGGCTGTCCCAGGAGTGTGTGAGCTTTACCACTGATACACTTCTTATCCATGTAAGCATTGTAAGCTTTAGAAATGGATTTTATTCCCAGGAAGCACTAAAGGCTTTCAGCCAGTGAAAGGTAAGTCGATGAATACTTCCCAGGTTCCATGTTTGCTGTTCTACGTTGGTTTGACTGTAGGAGAGAAAGAGCGGCCCCAGGGAGATGACTTAGGAGGTTATTGTGATCACCCGTGTGTGAGATGGGGCACTTGTATCACGTGGGGGCAGGAGAGCTGGAGGGAAGTGAACTGGATAGGTGGAGATGGAGGATTAGGACCAACGCATGGATGGGATGTGGTGTGGTGAGGGTGAGAGAGGAATCAAGGATGAGCTGACTTCTGAGATGGCTCCCACCTCTCATCCCCCAGATTGTTTCCAGGCAGTTTTAAAGCCCTTTCTCTACGTTCTCATTGTCCCCTGTCCTGTGACAGCTATTATAGTCCATACCACTCATTGAGGATAAGTTATTCTTTGTTTTTTTTCCCAGGCAGACTGTGACTTCAAGAGAGCTGTTTTTTTTTTTTTTCTCTTCTAGTAGAGTTCCTGACACACTGCTCGCACTTAATCAATTTATGCTTGAGTGAATAAGTGAATGAATAAATAAATAATGAGTGAATACCACAATGAATGACTTGGATGGCCATCAGAGTCTAGGCTCCACCAATCCAATGGCCAAGAAGATGTCCTCTTCAGCATTTCTAGGAAGTAAAGGTGACAGAGAGGAAAGGACAACAGCATTGAGTGAAGAGGGAGGACACAGAAAAGAGATGGAGAAAAGGGGGTTGATTTGGTTGGGTTGTAATAGAAGGAAATTACAGAGAAAGTAGCAGGAGGACTTTGAGAAACAGGACCATCACCCTTTCACTTAAAGAAAGAACTCACACAAATAATAGGGAAACTAATGCTTATGGTATAGCTCCTTGATGATATTTTAAATAGTAATAACCACTAACAATATTGAGTAATTTCTACATGTTGGGCTTTCTTCTAAGTATTTTACTTTGTTAACCTTTTTTAATCTTAACTCTTCCATGAGACACATGCTTTATTCTCCCCAGCTGGCAAATGAGGAAACAATAGTACCAAAAGATTTATCAACATAGCTAATGTAGAAGATCACACAGCAATTTAGTGATGGAGCCTGGAGGTGAGCCCAGGCAATCTGGTTCCACTGTCCATGCTCTCAACCAGTGTCCTGTACTTTACCCCAGGCATCAGGCTTTTTGTAAATTGGTGATCACTATTAAGCAATATCATTAGTTTGGGGCTAATTTCAGAAGAAGCTTCATTTTTTCAAAGGGACGAAGTTGAAAATGTAAGATACATATGAAATATATTTGCCAAGTTCACAGTGAAGCACAGAGTAATAGCTAGTTGGGTCAACACAAGTACTCTCATCTTAAGGGTTTTTCTATGTAAGTCTAGGCACTTGAAAGGTGAGTAATTAATGAGCACTTTGTCTCTTGGTTATTGGCTTTATTTTAATGCATAAGGAACTCTTTGATTTAACAATATCTTTCATATGGATTATTTACCACTGACTCTGTTATTCGGATATTCCTCTAATATAATAAACAGAGTCATGCACAGTCACAAGTAAATGAATGAATGAGGGAGTGATATTAATACTTGAAAGGGCGATAAATTCCCCTAGTCTCACTCTGGCACTTCTAGGCCAAGGTCTGTGTGTGTTTGATTAAATTTTGTAGATAGAATTTGCATCATTCTTGCTCTGCAGAATTTACTGACATAGAATGAAGCATAATTGATTATTCATTATTTGGAGTGCTCTCCCTTACAGTATTCATTTAGACCACAAACTTGAATGGTGAACTGTTGTAAGCATTCGTTTTTATTTCTTGCACTGTCAGAATTTCAGACAAGTTCTTGCAGGTAGCATTTTTTTTTAACATGCATAGCCGATAAACATTATCCTCTGTGCTACTAAATTTCTTTCTTAAAATATTTGTATTTGATAAACTTAGTTCTCATTACCCAGTGCATTAAGACCCAAGATTTCATACACAAAAGACTTGGCCACACAGCTTTTTGTTAATCTTGTTGATAAGACTGGATTCTCCATGAATATATATTTACATACAACTGCAGCTTTTAATTCTCTTGCATCTGTAAATATCCAGAACAATAAATAACTCTTGGAAAATTACCTTTTGACATTATATTGTTCCAATATATCTTTTCATTACAGCACAGTTCTGGAGAAATGCTCTAAGTGTAAAAAACCTCCCAATTGAATTGATTGGGCTGAATCAAAGAGTCTTATAAATTTATACCACAATTGATGTCAATGGTAAAGATGTTTATTCTCCCTTTAAAAAGCCATCTTTTATTTGTGAGTTTAATCATTTTCAGAAAGGAATATAGGAATTCCTAGAACATACGATGGGTACAAATTAAGACATTTTTAGTTCATAAAATTCTCACCTCTTTCCTTCTCAGGACTCCTCAGTTCAGTTTAGTTCAGTTGCTCAGTTGTGTCCAACTCTTTGTGACCCCATTCTCAGGACCCCTATTCTCTGCCAAAATAAAAAAAAAGTACAAAATATCTTTTTGTTGTCTTTAGCTGCTTAATGGGATCCAGTCCTTTTGAAGTTAAATTTTAGTCTTTAGCATCTGTATCATTTCTAATGCATGTTCATATTGAGACATGTGTTACTAATGCCTTTAACCACTAACATACCAAGTGTTAGCTACATATTATTTTGTCAATTAAGAAATATTATTTTACTCCACCTAGAGGTTACTATTACTGTTCATCATATTTGCATGAACTGGGAGTTCTCTGCGCACTATAATTTATATTCTATTACTGAACTGAACCAACACATTGTCTCGCCAACTAGGAGAGACTGGGAGATGGGTGCAAGATGGGGAGGAGAGGTATAGATCCCTATATAAGTGAAAGAATGTGGGTTTTATTTATTTATTTATTTATTTGCATGTAATGGTGTTAAATTATAGTCTAAGTGTTCTTTCTCATTAAAAGTTTAAGGGCTTAAGCAGAAAGGCATTCTGTATATTAATACTTTAGAAGGGTTGCATGTGTGCATGTTCAGTCACTCAGTCATGTCAGACTCTTGCGACCCTATGGACTGTAACCCGCGGGGCTCCTCTGTTCATGGGATTCTCCAGGCAAGAATGCTGGACTGGGTTGCTATGCCCTCCTCCAGGGGATCTTCCCGACCCAGGGATCAAACCCACATCTCCTGTATTGTAGGCGGATTCTTTACCACTGAGCCACCTGGGAAGCCAGGCTTAGGAGGGTTAGGTGAACAGAAGCCAACATTACCCCCCAGGATATAATGGAGAGGTAATGTTTCGCTGCAAAGCGACTGCAGCTGGATTTGTCATTACGATGAAAGCCTTTGATTCACTGAACCATAGTGGGACCTTCAAGTGTTAGACATTTCCCTGCTCCAGTCTACTGAAATACTTTTGATAATTTTCACTTCCTCCTGAAGTTGTTTTCATTTCCTCTAAAGTAATGTGGTAGTTATCTTAATCATTTTTCTTCTTCTCACCTGTTGACTTAAATCTGCTTTTTAACCTGTATTGCTTAGTCTAGGTTCCTCCCACCCTTGATTTCTTGCCTTCCTACAATGGCCTTATTTTATCACTTGTTTTGTTCATGTTAAAATCTAAGTTACAAAAACTTTAAAATTAATGCTCATATTTTAGCACCTAAAAATGAGCATTATCCATTTGCAGCAACATGGATGGGCCTAGAGATTGTCCAAGTTAGTGAAATCAGACAGAGAAGGAGAAATATCATATAAGAAAAGTGTTATAAATATATCCGGATGAGGGTGTATATGGAATCTAAAAAGAAATTATACAAATGAACTTATTTATAAAACAGAAGCAGACTCGCAGACTAGAGAATGAACTTTTGCTTGGCATGGGGGAAAGTGATAGGGAGTTTGGGATTGACATATACACACTGCTATAATTAAAATGGGAGCCAACAAGGTCCTACTGTATCGCACAGAGAACTCTGCTCAGTATTATGTGGCAGCCTGGATAGGAGGGGAGTTTGGGGAGAGTGGATACATGTATATGTTGGCTGTGTACCTTTGCTGTCCACCTGAAACTATCACAATGTTGTTGACCAGCTATACTCCAGTATAAAATAAAAACTTTAAAAAATAAAAACAAAAACAACTTTTAATGAGCATTATTAATTCCTGTCTTTGTTATAAAACATTATTGAAATGATATACTATTCTCTGTATATAAAATCATCCTTATTATTTTACATACTGAAGATGTAACCAAATCCCTGTAATGGTTCTTATCCTTTCACTTATTTAATAGACTCAGCTTGTAGATTTTGTATTTTCTTTTTCTTGTAG
Seq C2 exon
TCAACATGGAAAAAAGCCCACCTGTTAAGGGCTCCCTCTCTGGAAAAGTCAACCTACCTTGTCATTTCTCAACCATGCCTACCTTACCACCCAGTTATAACACCACCAGTGAATTTCTGCGAATCAAATGGTCTAAGATTGAATTGGACAAGACGGGAAAAGATTTAAAGGAGACTACTGTTCTCGTGGCCCAAAATGGGAATATCAAGATCGGTCAAGACTACAAAGGGAGAGTGTCGGTGCCTACACATCCCGAGGATGTGGGCGATGCCTCACTCACCATGGTCAAACTGCTGGCCAGTGATGCAGGCCGCTACCGCTGTGACGTCATGTACGGGATTGAAGACACACAGGACACGGTGTCACTGACCGTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014906:ENSBTAT00000019848:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0768612=V-set=PU(0.8=4.2)
A:
NA
C2:
PF0768612=V-set=PD(98.4=97.6),PF0019312=Xlink=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]