BtaINT0159738 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018543 | VIL1
Description
Bos taurus villin 1 (VIL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001013591]
Coordinates
chr2:107156229-107157052:+
Coord C1 exon
chr2:107156229-107156382
Coord A exon
chr2:107156383-107156951
Coord C2 exon
chr2:107156952-107157052
Length
569 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GATTTCCCCCCTCACTCCAGCCA
3' ss Score
6.13
Exon sequences
Seq C1 exon
AACTTTATCAAAGCGAAGCAGTACCCGCCGAGCACACAGGTGGAGCTGCAGAACGACGGGGCCGAGTCAGCTGTCTTTCAGCAGCTCTTCCAGAAGTGGACAGTACCCAACCGGACCACCGGCCTAGGCAAAACCCACACCGTGGGCTCCGTGG
Seq A exon
GTGAGGGCTGGCCTGAGGTGGGGTGGGGCCGGAAGTGGGCAGTGGGGCCAGGAGAGCGCTGGACCTGCCTCCTGCCCTCCTTGAGCACTCCTCTCGTGAACACTGCACCCTGACTCTGGGCTCCCCAGGTGGAGGGGCGTGGACACAAAGGGACTTGGATAAACTTAAGAGTTGTCACAAAAAGGGAGCTGAGAACAGCTCACCTTTCATTTGGAGTAGTGTTAGGTCTCCTCAGAACCCAAACCCAAACATCTCCAGTCTTCCAGACAATATTTGCTAAGGACAAGCTCCATGCCACGCACCCGGGGGAGGAGAAAATGTCCCTCCCGTGGCTGCTCTGGGAGGCCCGGACAAAACATGAGTCTTACAGGAAGGAGATAGGGTTCTGTGTTATAGCTCTGCCACTGGCTAGCTGTGTGACCTGGGACAAGCTACCGAATCTCTCTAGCCTCAGTTTCCTCATCTGTAAAATGGGTCTAAGAATTGCAGCTCCCATTCAGGGCTGTTGTGAGAACCTGGGGGAACTCAGCTGGTGACATTGGGTGTCATGATTTCCCCCCTCACTCCAG
Seq C2 exon
CCAAGGTGGAACAGGTGAAGTTTGATGCCATGTCCATGCATGTCCAGCCTCAGGTGGCTGCCCAGCAGAAGATGGTGGACGATGGGAGTGGGGAGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018543:ENSBTAT00000024683:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(34.2=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAGTACCCGCCGAG
R:
CACCTCCCCACTCCCATCG
Band lengths:
238-807
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]