GgaINT1029675 @ galGal4
Intron Retention
Gene
ENSGALG00000011433 | VIL1
Description
villin-1 [Source:RefSeq peptide;Acc:NP_990773]
Coordinates
chr7:22035084-22035427:-
Coord C1 exon
chr7:22035274-22035427
Coord A exon
chr7:22035185-22035273
Coord C2 exon
chr7:22035084-22035184
Length
89 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GTCCTCGCTCTTCCCCACAGCTA
3' ss Score
10.67
Exon sequences
Seq C1 exon
GGCTTCATCAAAGCCAAGAACTACCCGGCCAGCACCAGCGTGGAGACAGAGAACGATGGGTCTGAGTCCGCTGTCTTCAGGCAGCTCTTCCAAAAATGGACTGTTCCCAACCAAACCAGTGGGCTGGGCAAGACCCATACTGTGGGCAAAGTGG
Seq A exon
GTGAGTGCCACGGGGTGCTGGTCCCACAGGATCGGGGGGATGCTCAAGGGGGTCCCCACGCCTGGCTCAGTCCTCGCTCTTCCCCACAG
Seq C2 exon
CTAAGGTGGAACAGGTGAAGTTTGACGCCACCACAATGCATGTCAAGCCTGAAGTGGCCGCCCAGCAGAAGATGGTGGATGATGGATCTGGGGAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433:ENSGALT00000038192:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=NA C2=0.118
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(33.3=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGGAGACAGAGAACGATG
R:
CCACTTCAGGCTTGACATGCA
Band lengths:
174-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]