DreINT0036220 @ danRer10
Intron Retention
Gene
ENSDARG00000059342 | avil
Description
advillin [Source:ZFIN;Acc:ZDB-GENE-060421-6683]
Coordinates
chr11:213173-213558:-
Coord C1 exon
chr11:213405-213558
Coord A exon
chr11:213274-213404
Coord C2 exon
chr11:213173-213273
Length
131 bp
Sequences
Splice sites
5' ss Seq
TCGGTGCAT
5' ss Score
0.95
3' ss Seq
TGTGTTTGTGTGTGTCTCAGCTG
3' ss Score
8.81
Exon sequences
Seq C1 exon
GAGTTCATCAAGCTGAAGAATTACCCGCTCAGCACCAAAGTGGAGTCCATCTGTGACGGAGGAGAATCAGCTCTGTTCAAGCAGCTCTTCAAGAACTGGACAGTCAAAGACCAGACGCAGGGCCTGGGCCGCACACACACTGTTGGAAAAATCG
Seq A exon
GTGCATGCACGCACACACTCACACACACACACACACACACAAACACACACACACACACACACACACACACACACACACACACACACACATCTATGTTTATTAATCTGAGTGTGTGTTTGTGTGTGTCTCAG
Seq C2 exon
CTGATGTTCCTCAGGAGAAGTTTGATGCCAGCCGGATGCACATGATGCCGGAGGTGGCGGCGCAGGAGCGCATGGTGGACGACGGCAGCGGGGAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059342:ENSDART00000104546:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=NA C2=0.088
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(33.8=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAATTACCCGCTCAGCAC
R:
CTGTTTCTCCCCGCTGCC
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]