MmuINT0022331 @ mm9
Intron Retention
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:126446785-126447133:+
Coord C1 exon
chr10:126446785-126446938
Coord A exon
chr10:126446939-126447032
Coord C2 exon
chr10:126447033-126447133
Length
94 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
3' ss Seq
TCCCACCTCTTTCTCTGCAGCTA
3' ss Score
11.09
Exon sequences
Seq C1 exon
GATTTCATCAAGATGAAGGGATACCCCAGCAGCACCAACGTGGAGACCGTCAACGATGGCGCAGAGTCGGCCATGTTCAAACAGTTGTTCCAGAAATGGTCGGTGAAGGACCAGACCACGGGCTTGGGGAAAATATTCAGCACTGGTAAAATCG
Seq A exon
GTGAGATCGCGCCACGTGTGTCTTCTTCGGCTGGGACCCTGGAAAGAGGCTCGAGTGTCTGCTCACTTGGCTTTTCCCACCTCTTTCTCTGCAG
Seq C2 exon
CTAAAATCTTCCAGGACAAGTTCGATGTGTCTCTGCTACACACCAAGCCAGAAGTGGCTGCACAGGAGAGAATGGTGGACGACGGCAAAGGCCAGGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432-Avil:NM_009635:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(33.3=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGTCGGCCATGTTCAAA
R:
TCCACCATTCTCTCCTGTGCA
Band lengths:
173-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: