RnoINT0024202 @ rn6
Intron Retention
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70300771-70301119:+
Coord C1 exon
chr7:70300771-70300924
Coord A exon
chr7:70300925-70301018
Coord C2 exon
chr7:70301019-70301119
Length
94 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
3' ss Seq
CCCCACCTCTTTCTCTGCAGCTA
3' ss Score
10.58
Exon sequences
Seq C1 exon
GATTTCATCAAGATGAAGGGTTATCCCAGCAGCACCAACGTAGAGACCGTCAACGATGGCGCAGAGTCGGCCATGTTCAAACAGTTGTTCCAGAAATGGTCGGTGAAGGACCAGACCACTGGCTTGGGGAAAACATTCAGCATTGGTAAAATTG
Seq A exon
GTGAGATTTTGCCACATGTGTCTTCTTCTGCTGGGATCCTAGAAAGAGGCTCGAGTGTGTGTTCACTTGGCTTTCCCCACCTCTTTCTCTGCAG
Seq C2 exon
CTAAAATCTTCCAGGACAAGTTCGACGTGACTCTGCTACACACTAAGCCAGAAGTGGCTGCTCAGGAAAGAATGGTGGACGACGGCAACGGCAAGGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419:ENSRNOT00000073237:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(33.3=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCACCAACGTAGAGAC
R:
GTGTGTAGCAGAGTCACGTCG
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]