BtaINT0024438 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55992004-55992360:+
Coord C1 exon
chr5:55992004-55992157
Coord A exon
chr5:55992158-55992259
Coord C2 exon
chr5:55992260-55992360
Length
102 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
TCCCAACCCCTTCTCTGCAGCGA
3' ss Score
7.72
Exon sequences
Seq C1 exon
GACTTCATCAGGATGAAGGGCTACCCCAGCAGCACCAACGTGGAGACCGTCAATGACGGTGCCGAGTCAGCCATGTTCAAGCAGCTGTTCCAGAAGTGGACGGTGAAGGAACAGACCGTGGGTCTGGGGAAAACGTTCAGCGTGGGTAAAGTTG
Seq A exon
GTAAGACTGCCCCCAGATGGTGTTCTCATTGTGGGGAGTCTCTAGAAAGATGGGCATGGATGCTTTTCATTCACCTGGCTTCTCCCAACCCCTTCTCTGCAG
Seq C2 exon
CGAAGGTTTTCCAGGATAAATTTGATGTAACTCTGCTGCACACCAAACCAGAGGTGGCAGCCCAGGAAAGAATGGTGGATGACGGCAACGGCAAAGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913:ENSBTAT00000022497:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(33.3=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAGGATGAAGGGCTACCC
R:
AACTTTGCCGTTGCCGTCATC
Band lengths:
247-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]