RnoINT0162853 @ rn6
Intron Retention
Gene
ENSRNOG00000015408 | Vil1
Description
villin 1 [Source:RGD Symbol;Acc:1307048]
Coordinates
chr9:81702774-81703603:+
Coord C1 exon
chr9:81702774-81702927
Coord A exon
chr9:81702928-81703502
Coord C2 exon
chr9:81703503-81703603
Length
575 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
TGGTGTCCTCCTCTCTCCAGCCA
3' ss Score
8.91
Exon sequences
Seq C1 exon
AACTTCATCAAAGCCAAGCAGTACCCACCTAGCACGCAGGTTGAGGTGCAGAATGATGGGGCTGAGTCCGCCATTTTCCAGCAGCTCTTCCAGAAGTGGACAGTGCCCAATCGGACCTCAGGCCTTGGCAAAACCCACACAGTGGGCTCTGTGG
Seq A exon
GTGAGAACCCAGGCCTCCCTCCTTCCTTTCCCGATTCTCCTCTTTCAAACACATTTTACCGGCTCCCTGGTGGGTACTGAGAACCCAGTGGACAAAAAGTCTCGAGTTATCACAAAGGGAAGGGGAGCTAAAAAATGACTTTTGTCTTTCATGTGGAGTGGGGTTGAGGCTTCCTGGGAACCAAAAACCTCGGGCAGACTATATTTGCTGAGGGCAGACGCTGGCGGGGGCGGAGGAGTTCAAATGAAAGGAGAATGTGGAGCCTTATCACCATGGGATTCCTGCTAAGCTGGGAGGCAAGGCCGTGCTTGAAGTCTGAAAGCTCCAGGGAGTCGGACTAAATAAAGCACTACTCTTGACCCTCAGTTGCCCTCAGTGGCCTGGGAGCCACTGATTAGGTCTTAGGGGCTGTGACAGCTCTGCTACTCTAGTGTGTGACCTTGGATAGACAGCTGAACGTCTCTGGCTTTAGTCTCTTCCTCTATCATGTGGGCCTAGGAGTACCGGCCAGCACTCAGGACTGTAGTGAGGGAGGATACCTCAGCTAGTGACAGCTGGTGTCCTCCTCTCTCCAG
Seq C2 exon
CCAAGGTGGAACAGGTGAAGTTTGATGCTCTGTCCATGCACGTACGGCCTCAAGTGGCTGCCCAGCAGAAAATGGTGGATGACGGGAGTGGGGAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015408:ENSRNOT00000021432:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(33.3=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCATCAAAGCCAAGCAGT
R:
CTGCACTTCCCCACTCCCG
Band lengths:
254-829
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]