BtaINT0159765 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012963 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr22:11495424-11496171:+
Coord C1 exon
chr22:11495424-11495495
Coord A exon
chr22:11495496-11495895
Coord C2 exon
chr22:11495896-11496171
Length
400 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
TGAGGCCCCTCTCCTGGCAGGAG
3' ss Score
8.54
Exon sequences
Seq C1 exon
AACACCCAGTCCTACGAGGAGGTGGTGGCGGGTGACCCGGGAGCAGTTTCTACCATCTCTGAGATAACAGCC
Seq A exon
GTGAGTATTAGGGGCCCCCTTCCCTGGTGGCTCAGATAGTGAAGAATCTGCCTGCAATGCAGGAGACCTGGGTTCAATCCCTGGGTTGGGAAGATGCCCTGGAGGAGGGCATGGCAACCCACTCCAGTAATCTTGCCTGGAGAATCCCCATGGACAGAGGAGCCTGGTGGGCTACAGTCCATGGGGTCAAAAAAGAGTTGGACCCAGCTGAGCAACTAACGAACACACACACTCATGGGTCTGGGCTGGCATGGCTCAGAGGCCAGAATGAGCAGGGAAGGAGCCAGGCGCCGGAAGGGGCAGGAGTGGCATTGGGGGCAAGAGGACCAGGGGGATCAGTGCAGCCTCCTGAGGGAGCCCATCCCCCAGCTTCCTGAGCCTGAGGCCCCTCTCCTGGCAG
Seq C2 exon
GAGATCGTCAACTTCCGGCTGTCCAGATGGCCAGGCAATGACAGGGCAGGCCCGTTGGCCCTGCGGGCCCTCAAGAGCTCCGAGGACATCTCAGAGAGTGAGCTGGAGCTGGGCCCCCGCGCAGGCACCGGCAGCCGGAGCACCGTCAGCAGCGCCAGCAGCAGCAGCTACCAGAGCAGCCCCCAATCCCTGGGCAGTGGGGGCCTGCCCCGGGAACAGCTGAGGCACCAGGCTGCCGAGGACCTGCCGGAGGGCGTGGACCCGGCCCACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012963:ENSBTAT00000017231:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.717
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCCAGTCCTACGAGGA
R:
CTCCTTGTGGGCCGGGTC
Band lengths:
348-748
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]