RnoINT0162880 @ rn6
Intron Retention
Gene
ENSRNOG00000011446 | Vill
Description
villin-like [Source:RGD Symbol;Acc:1304843]
Coordinates
chr8:127752264-127752771:+
Coord C1 exon
chr8:127752264-127752335
Coord A exon
chr8:127752336-127752513
Coord C2 exon
chr8:127752514-127752771
Length
178 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
TGAGGCTTCTCTCTGGACAGGAA
3' ss Score
7.85
Exon sequences
Seq C1 exon
AGCAGCCAGTCCTACGAGGAGATGGTGGAGGGCAGCCTGGGTCCGGGATCTGCAATCTCTGAGATAACAGCA
Seq A exon
GTAAGTGTGGACTGTTTCCTGGAAGCCCCGCAGTGGGGCCTGCATTCAGACGGAAACGGACAGAGGTGGAGGAGTGAGGGGTACAGGCGGTGCCAAGAGGCCTGTGGGTTCAATGTGGTCTTTGGTGGGTACCTGCCTGCCCTCTCTCTCCCGGATCCTGAGGCTTCTCTCTGGACAG
Seq C2 exon
GAAGTCCATAATTTCCAGCTAACTGCACGGCCGAGTGATAGCGAGGCAGGCCGCCCGACACTGCTGGCCTTCAAGGGTTCCCAGGATAGCCCAGAGAATGAGCTGGAACTGGGCCTCAGGGTGGATGGCGAGACGCCCAGCATGAATCACACCAGCAGCTGCAGTAGCTCAATGATCAATGGGAGCCTGCCCCGGGAAAGGCTGATGCACCAGGCCCTAGAGGACCTGCCACAGGGTGTGGACCCAGCCCGAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011446:ENSRNOT00000015888:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.698
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGAGGAGATGGTGGAGGG
R:
GGCAGGCTCCCATTGATCATT
Band lengths:
252-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]