MmuINT1034686 @ mm10
Intron Retention
Gene
ENSMUSG00000038775 | Vill
Description
villin-like [Source:MGI Symbol;Acc:MGI:1201781]
Coordinates
chr9:119070278-119070814:+
Coord C1 exon
chr9:119070278-119070349
Coord A exon
chr9:119070350-119070556
Coord C2 exon
chr9:119070557-119070814
Length
207 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
TGAGGCTTCTCTCTGGACAGGAA
3' ss Score
7.85
Exon sequences
Seq C1 exon
AACAGCCAGTCCTACGAGGAGATGGTGGGGAACAGCCTGGGACCGGGATCTGCAATCTCTGAGATGACAGCA
Seq A exon
GTAAGTGTTGGACAGTTTCCCTGGCAGCCCCACAGGGGGTTTGCGTTCAGACCGAAGGGAACAAGATACAGGTGTGAGGCGTAGGAGCGAGGGCCCAGACTCCCAGATCGAGGAGTTCAGACAATGCCAAGAGGCCTGTGGGTTCAATGTGGTCTGGGTGGGTGCCTGTCCTCTCTCTCCTGGACCCTGAGGCTTCTCTCTGGACAG
Seq C2 exon
GAAGTCCATAACTTCCAGCTAACTCCACGGCTGAGTGATAACAAGGCAGGTCACCCGGCACTGCAGGCCTTCAAGGGTTCCCAGGACAGTCCAGAGAATGAGCTGGGGCTGGACCTCAGGGTGGATGGCGCAAACCCCAGCATGAACCACACCAGCAGCTGCAGTGACTCAATGGTCAATGGGAGCCTGCCCCGGGAAAGGCTGATGCACCAGGCACTGGAGGACCTGCCACCGGGTGTGGACCCAGCCCGTAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038775:ENSMUST00000051386:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=NA C2=0.702
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGAGGAGATGGTGGGGAAC
R:
GGTGGCAGGTCCTCCAGT
Band lengths:
293-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types