GgaINT0102141 @ galGal4
Intron Retention
Gene
ENSGALG00000005763 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr2:4590712-4591828:+
Coord C1 exon
chr2:4590712-4590780
Coord A exon
chr2:4590781-4591579
Coord C2 exon
chr2:4591580-4591828
Length
799 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
ATTTCTCCTCCATTTTGCAGGAC
3' ss Score
11.06
Exon sequences
Seq C1 exon
GATGGCAAATCCTATGAGGAGATGAAGAACAGCTTAGGAGATGTGTCGGCTCTATCTGAGATCACGGTG
Seq A exon
GTGAGTGGCTACTGGACCAGATAGGTGGGAAATACCTGAGCTTAAACATCACCACATCCCCCTGTCTGTTTGCATGAAGGAGAGGCTGTAATGATCAGAGTAGACATGGGGACCTCAAGCTGTCAGGATCAGAGGTGTTCTCCTCAGTGGAAAGCAGAGAGAAATGTCATTCATAACCTATAAATACAATATGTGCAATTAAGAGTTGTATGAGCGGTTTGCAGAGCTGTATCACCCGAGACCCCTGGTGTGGGGCCCCTGCTCAGGAAGGACACAACCCAATGGGAGGTCCCACAAAGAGAGCACAGCATCCCAAAGGTTCCAAACATAGCAGTCACATGGGATCAGTTCTGCCCTGGACAACGGCAGGAGGAAGGCTGGAAGGTAGTGGAAGGGCTTTGAATGGGAAAGATGGCAGTGTGGGTATAAAAGTATGCAACTAATTCAAAAGTTTTAGACATGGTCGTCTCTAATCTTACCTTCTGTGCTCCCACACACACCTTTCCCTGCTGTTATCTTGGGAAAAATGAGAGTACTGTAAATATCTTCTGTTATTTCTACGGGCTCCCAAGAGGGTTGTGTTTTTAACAGTCCTAACATCTCGGTGTAATACTGATGGAAGTGCTGGACTGTTGTTCTGGTGTTGTCTTTCTCCTTGCTGCTTGGCTCTCCAAAGCAGCAGACCAGCAGATGGCCTGTGCCAGAGCAGTGCCTTCAGCCCCAACAGAAAGATGCAGAGGTAGCCCCCGGTTTGCTCTACCAGAGCTGTTTCTCTTGACATTTCTCCTCCATTTTGCAG
Seq C2 exon
GACCTGAACAACATCAGCCTGAGCAAAAGAACCCTCAGCATGACCAATCTGACTGGTTCAAGCACATCAAGTGCTTCCCCGGAGTACAAATCGCACTTCAACCACAATGACAGCAGCAGCTACGCCAACAGCAGCGCCAACGGCAGCCCTTTCACAGTGCCCAGTGAAAAGGGAGTTTACTCCCGAGAGGTGCTGATGAACAAAACTGTGGATGAACTTCCAGAAGGAGTGGATCCCACTAAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763:ENSGALT00000009258:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.410
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTATGAGGAGATGAAGAACAGC
R:
TGGGATCCACTCCTTCTGGAA
Band lengths:
298-1097
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]