BtaINT0159766 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012963 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr22:11495896-11496681:+
Coord C1 exon
chr22:11495896-11496171
Coord A exon
chr22:11496172-11496414
Coord C2 exon
chr22:11496415-11496681
Length
243 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CTGCCCCCACCCTGCCTCAGGCC
3' ss Score
7.14
Exon sequences
Seq C1 exon
GAGATCGTCAACTTCCGGCTGTCCAGATGGCCAGGCAATGACAGGGCAGGCCCGTTGGCCCTGCGGGCCCTCAAGAGCTCCGAGGACATCTCAGAGAGTGAGCTGGAGCTGGGCCCCCGCGCAGGCACCGGCAGCCGGAGCACCGTCAGCAGCGCCAGCAGCAGCAGCTACCAGAGCAGCCCCCAATCCCTGGGCAGTGGGGGCCTGCCCCGGGAACAGCTGAGGCACCAGGCTGCCGAGGACCTGCCGGAGGGCGTGGACCCGGCCCACAAGGAG
Seq A exon
GTGGGTGCTTAGAACCCCTGCCGCTCCCAGTCCCCACACTCGTGCAGGGAAAGCTGAGCTGCAGGCACCCAGGGCGTGACCCACAGGTGGTGGGCCATGGGCAGCTGCCCTGGGAGACGAGTGTTCCAGATGGGGTGATGGGCAGAGAGACGTGGGAGAGGATGGCACCTCTGGGTGGGTGGGACAGGGTTGTGGGACACCCTGCCTCTGCACCCACTCTCTCCTGCCCCCACCCTGCCTCAG
Seq C2 exon
GCCTATCTCTCAGACTCTGATTTCCAAGATATCTTTGGGAAGTCCAAGGAGGAGTTCTACAGCATGGCCAAGTGGAGGCAGCAGCAGGAGAAGCAGCAGCTTGGCTTCTTCTGAACCCAGGCCCTGCCCTGCCAGTGCCACCCAGATGGTCCAGGCGTGGGCACCCGCCTGCGGGCACCTCCGTACAAATACCAGAGCCTGAGGAGGTCCTCCTGGCACTCCCTCCTTGGAGACTCCTGGTCCCTAAAATAAAAGCCAGTGGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012963:ENSBTAT00000017231:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.717 A=NA C2=0.162
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0220914=VHP=WD(100=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCAGAGCAGCCCCCAATC
R:
GGTATTTGTACGGAGGTGCCC
Band lengths:
302-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]