MmuINT0172946 @ mm10
Intron Retention
Gene
ENSMUSG00000038775 | Vill
Description
villin-like [Source:MGI Symbol;Acc:MGI:1201781]
Coordinates
chr9:119070557-119071519:+
Coord C1 exon
chr9:119070557-119070814
Coord A exon
chr9:119070815-119071133
Coord C2 exon
chr9:119071134-119071519
Length
319 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
TCTTACCCTCCCACCCCTAGTTC
3' ss Score
9.24
Exon sequences
Seq C1 exon
GAAGTCCATAACTTCCAGCTAACTCCACGGCTGAGTGATAACAAGGCAGGTCACCCGGCACTGCAGGCCTTCAAGGGTTCCCAGGACAGTCCAGAGAATGAGCTGGGGCTGGACCTCAGGGTGGATGGCGCAAACCCCAGCATGAACCACACCAGCAGCTGCAGTGACTCAATGGTCAATGGGAGCCTGCCCCGGGAAAGGCTGATGCACCAGGCACTGGAGGACCTGCCACCGGGTGTGGACCCAGCCCGTAAGGAG
Seq A exon
GTGGGTACTAGACCTAACTGCACTGGGGAATCCCACAGGATCCTGTCCCATAATGCACTCTGAGCAGACCGGAGAAGTTTTGAATGAATGACACCTCCGGGATGGGACAGGAATCTGGGCTCCAGGAACTCCCATCCTTCCCCGCCCACTCCCACCCTCCTATCCCCATCCCTCCCCGCCCACTCTTACCCTTCCACCCCCATCCCTGCCCGCCCACTCCCACCCTCTCACCCCTATCCCTCCCACCCCCATTTCTCCCTGCCCACTGTACCCTCCCACCCCCATCCCTCTCCACCCACTCTTACCCTCCCACCCCTAG
Seq C2 exon
TTCTATCTCTCAGACTCTGATTTCCAAGACATCTTCGGGAAATCCAAGGAGGAGTTCTACAGCATGGCCAAGTGGAAGCAGCAGCAAGCGAAAAAGAAGCTGGGCTTCTTCTGATGTGGGGAACCCTGTGCCACATACCCTGAAATTCCTCCTGGGGTAACTCCCACTTCCTAATAAAAGCCAGTGGCTGGCATCGGGTGTGGCACGTGTGCCTGTGTGCCTTCGAGCCCCACCATCTGGTAGAGTCCCCTCCTCAGTGGCAGGGCCCTGTGGCACTCTGGGACACCGTCTTCCGTGGAAAGGATTCCTTCTGACTGCTTGCTTCCGGTCAGAAGAGGTATGCATGTAGATCTTGAGGGACTCCCTGGTGTCTTTGTAAAGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038775:ENSMUST00000051386:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.702 A=NA C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0220914=VHP=WD(100=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAACAAGGCAGGTCACCCG
R:
CCCACATCAGAAGAAGCCCAG
Band lengths:
342-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types