RnoINT0162881 @ rn6
Intron Retention
Gene
ENSRNOG00000011446 | Vill
Description
villin-like [Source:RGD Symbol;Acc:1304843]
Coordinates
chr8:127752514-127753349:+
Coord C1 exon
chr8:127752514-127752771
Coord A exon
chr8:127752772-127753108
Coord C2 exon
chr8:127753109-127753349
Length
337 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
TCCTACCCTCCCACCCCCAGTTC
3' ss Score
9.12
Exon sequences
Seq C1 exon
GAAGTCCATAATTTCCAGCTAACTGCACGGCCGAGTGATAGCGAGGCAGGCCGCCCGACACTGCTGGCCTTCAAGGGTTCCCAGGATAGCCCAGAGAATGAGCTGGAACTGGGCCTCAGGGTGGATGGCGAGACGCCCAGCATGAATCACACCAGCAGCTGCAGTAGCTCAATGATCAATGGGAGCCTGCCCCGGGAAAGGCTGATGCACCAGGCCCTAGAGGACCTGCCACAGGGTGTGGACCCAGCCCGAAAGGAG
Seq A exon
GTGGGTACTAGACCTAACTGCTGGAAGACCCCACGGGATCCCGCCCCATAGTGCATTCTGAGCAGACCGGAGAAGTCAAGAACGGATGACACCTCCGGGTGGGACAGGAATCTGGGCTCCAGAAACTCCTACTCCTACCCTCCCATCCCCATCCACTCCTACCCTCCCCGCCCACTCCTCCTATCTTCCCACTCCTATCCTCCCCGCCCACTCCTCCTATCCTCCCACTCCTACCCTCCCCGCCCACTCCTCCTATCCTCCCACTCCTACCCTCCCCGCCCACTCTTACCCTCCCAACTCCATCCCTCCCCGCCCACTCCTACCCTCCCACCCCCAG
Seq C2 exon
TTCTATCTCTCAGACTCCGATTTCCAAGACATCTTCGGGAAATCCAAGGAGGAGTTCTACAGCATGGCCAAGTGGAAGCAGCAGCAAGAGAAAAAGAAGCTGGGCTTCTTCTGACCTGGGGAACCCTGCCCCTCACACCCTGAGATTCCTCCTGGGTTAACTCCCACTTCCTAATAAAAGCCAGTGGCTGGCATGGGGTGTGGCATGTGTGCCTGTGTGCCTTCGAGCCACACCATCTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011446:ENSRNOT00000015888:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.698 A=NA C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0220914=VHP=WD(100=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGGGTTCCCAGGATAGCC
R:
CCAGGAGGAATCTCAGGGTGT
Band lengths:
343-680
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]