GgaINT1029667 @ galGal4
Intron Retention
Gene
ENSGALG00000011433 | VIL1
Description
villin-1 [Source:RefSeq peptide;Acc:NP_990773]
Coordinates
chr7:22032622-22033017:-
Coord C1 exon
chr7:22032880-22033017
Coord A exon
chr7:22032811-22032879
Coord C2 exon
chr7:22032622-22032810
Length
69 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
AGCCTCCTTCTTTCCCCCAGAAC
3' ss Score
9.62
Exon sequences
Seq C1 exon
GGGCTCACCTCCAAGAATGAGGTCTTCACAGCCACCACCACACTTGTCCCCACCAAGCTGGAGACCTTCCCACTGGACGTGCTGGTGAACACTGCAGCTGAGGACCTGCCCCGGGGTGTGGATCCCAGCAGGAAGGAG
Seq A exon
GTGAGTTTGGGGGAGGCCACAGCTGGGGGAAGCCCTGCAGCTTGAGCTCAGCCTCCTTCTTTCCCCCAG
Seq C2 exon
AACCACCTCTCTGATGAGGACTTCAAGGCTGTTTTTGGCATGACCCGCTCTGCCTTTGCCAACTTGCCCTTGTGGAAACAGCAGAACCTCAAGAAGGAGAAAGGACTCTTCTAGGAGGGGAGGCTCAGCCTACGGCCAGCCCAAGTAAACACATTATTTTTACTAAATAAAATGGATTTGGAATGGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433:ENSGALT00000038192:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.239 A=NA C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0220914=VHP=WD(100=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACACTGCAGCTGAGGAC
R:
TGAGCCTCCCCTCCTAGAAGA
Band lengths:
181-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]