HsaINT0180189 @ hg19
Intron Retention
Gene
ENSG00000127831 | VIL1
Description
villin 1 [Source:HGNC Symbol;Acc:12690]
Coordinates
chr2:219305445-219314248:+
Coord C1 exon
chr2:219305445-219305585
Coord A exon
chr2:219305586-219313945
Coord C2 exon
chr2:219313946-219314248
Length
8360 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TGGTCCCTCTCTTCTTCTAGGAA
3' ss Score
11.83
Exon sequences
Seq C1 exon
GAGGTCACAAGCCCCAAAGTGGACGTGTTCAATGCTAACAGCAACCTCAGTTCTGGGCCTCTGCCCATCTTCCCCCTGGAGCAGCTAGTGAACAAGCCTGTAGAGGAGCTCCCCGAGGGTGTGGACCCCAGCAGGAAGGAG
Seq A exon
GTAGGTCAGATTCTCAAAGGAAGACAAAGAAGTCCATTTGTTGGACCACCATAGTTGACTCCCAGATTTGGCCCTGCAGGTGACTAGGTGCTGGGGATGAACAAGACAGATGGGATCCTGCCTTCATGCCACCTTATATCCCAGGAGGAGAGAGATCAGAGAAGCCTGGTTACACTATTATTTAATTTCAGGGTTAAGTGCCAGAAAGGTGAAGTACAGGAGCTGTGAAGAGTATTACAAACAGGGCCGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCAATATGGGGAAACCCCATCTCTACTAAAACTACAAAAATTAGCCAGGTGTGGTGGTGTATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGCCATGAGAATTGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGTCAAGATCATGCCACTGCACTCCACCCTGGGTGACAGAGTGAGACTGTCTCAAAAAAAGAAAAAAAAAAAAGGTATTACAAAGAGGAGCCTGATTTAGAGATTTCTTTCTGAAAGACAAATAGGAATTATTGAGGCAAAGTAAGTTAGTTCTGGAGAAGGGACAGCTAACATGAAGCCCAAAGGCAAGGAATAAAAATGGGGGCAAAACTGCAAGAGGGCCAGAGTGGCTGTGGTGGTGTGCAGAGCCAGGGAGGGAGGCAGGGCTGAACTGGCAGTGCCTTCTACCCCAAGTTAAGGATCGTATCATGTATCCTGGTGGTGAAGGGGAGTATCATTATGGTTGAAGTAGCAGAGTGACAGACTTACATTGGCCTGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGAGAGGCCGAGGAATGCGGATCACCTGAGGTCAGGTGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAATTACAAAAATAGCCGGGCATGGTGGCTTGTGCCTATAATCCCAGCTACTCGGGATGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCCGAGATTTCACCATTGCACTCCAGCCTGGGCGACAAGAGTGTAACTCCATCTCAAAATGATAATAATAATAATAATTATAGCTTCTCATCGAACAATAGCCTGGAAGGTGGCAAGAGCAGCCATAGGAACACCAGTTAGGAGAGACAGCACAGCTGCTCTCAGGCCGACAGGTAGGTGGGAACCTAGAACAAGTCATGGTGGAGGAGGTGGAGAGAAACATTTAGGAGGTAAAATCAATGATATTTGGTAATTACTGGATAAAGAGTATGAGAGAAGAGAAAATAGCATCATTCTCCAAGATAGAAAACTGGATCAGGCTGAGCTTAGGGGAAGACAATCATGAGTTTGGTGGTAGCTATGTCCTTTGAGGTTTAGATACATGTTCAGTGGGCAAGCAATTCAGAGGAACACCAGGGCAGAGATATGAATTTAAGACTCATCAGCACATGGTCCATCTGGTAACTGGGGTTAGCACAGCAAGAAGAGCTTGTTCAAAACACTTTTTGTGTATGTGTGGGGAATGGAGTTTGGGGCTGGACACTTTTTTTTAAATTTTAGATAAGATCTCACTCTGTTGCCCAGGCTGGAGTGCTGTTGCAATCATGGCTTACTACAGCCTCAACTTTCTGGGCTCAAGTGATCCTCCCACCTCAGCCTCCCAAAGTGTTGGAATTACAGCGACTGCACCCAGCCTAAGAACACATTTCTAATATTCAATCCCACTTCATGAAGATCCAAAATAGGCTGCCAATCTAGCTTAGGGGTATTGAGAGGAGAGATAATATACTCTGTATAATAAGTCATAAAGTAGTCTTACAAATGAATCAAGGGATCTACAGAAGAGAGATACCTAGTTTCTCTCTCAGAACATCAAAGTCTGTTAAGGGTTTCGGCTCAATATTTATATAAGTGTTTTGTTCTCAGAGAATTTCAATTCTGCCTTTTACCTTAGAGAGCACATTCCTGTGTTCTCTCCTGGATTCTCCCACCTGTGAGGTTGCTGGGAGGCTAGGAGGCACATGGGTCCTCACTGTAACATTGGGATGATCCCTGTATGATGACAAGCTAAGCCCAGCCCTTGGTACATAGTACTCTACAAATGAAAGCTGTTATTATTGCCTGTTCTACACCTGAGAAAACTGAAGTCCAGAGAGATGAAGTGACTTGCCTAACATTACTAGTTAGTTGCAAAGCCAGAGCAAGAACCAGGCCTTCAGAGTCCCACTGTTACCATCATGCCATGCAGCATAAAGGAGGTATTTCTTTCTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGACTCCAAGTAGCTAGGATTACATCCGCACACCACCACGCCTGTCTAATTTTAGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGCTGGTCTCAAACTCCTGACCTTAGGTGATCTGCCCACCTTGCCCTCCCAAAGTGCTATTACAAGCATGAGCCACCACGCCCGGCCAATAATGGAGGTGTTTCTAAAGGAGGACAGCCAATGTTATTGAACCAGAGGATTGATGGAAGGCAGAAATGGATTGCTAATTTTAAATAGACAGACTCAAGACAGCCCCATTATGGTAGAAGCAGTCAAAGAAGGCTTAGATTCTTTTGTAAAAATCAGTTTTCTGTGGTTTTTTTTTGAGACAGAGCCTCTTTCTGTTGCCCAGGCTGAAGTGAAGTGGCACAAGCTTGGCTCACTGCAACCTCCGCCTCCCGAGTTCAAGCAATTCTGCTGTCTCAGCCTCCTTAGTAGCTGGGACTACAGGCGCACACCATCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGATACGGTTTCACCATATTGGCCAGGCTGGTGTCCAACTCCTGACTTCAGGTGATCGACCTGCCTCTGCCTCCCGAAGTGCTGGGATTACAGGCATAAGACGCTGCGCCTAGCCTGTGGCTGATTTTTTTGTTTTGTTTTTTGAGATGGGGTTTCACTCTTGTTGCCCAGGATGGAGTGCAATGGTACAATCTCGGCTCACTGCAACCTCCACCTCCCTGGTTCAAGCAATTCTCCTGCCTCAACCTCCCAAGTAGCTGGGATTACAGGCGTGCGCCACCATACCCGGCTAATTTGTTTTTGTATTTTTAGTTGAGACAGGGTTTCACCAGATTGGTCAGGTTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACCACACCTGGACTGAAGCTGATTTTTTTTCTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCGCCCAAGCTGGAGTGCAGTGGCACGATCTCGGTTCACTGCAAGCTCTGCCTCCTGGGTTCACGCCATTCTCCTTCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCATCACGCCCGGCTAATTTTAGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCCGACCTTGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCGGCCGGCCTGTAGCTGATTTTTTAATCATGGAAGTAGTATACATTCTTGTGGGAGAGCTGAGTTCAGTGTCATGTGGGAGTGTAGGAGAGGTTTTCAGATCTCTCTGTCTGCTCCAATCTTGCAAGGTGAGCCAGTGACAACAGTGGGGTGGTGGGTCTGGCTGCAGGCAGAGCAAGATAGTAATCTAAGTATTTGTGCACTGATGAGTAAACAACAGGGAGGCGGATGTAGGCATGGGTGAGGCTGGTAATCAGCTGGCAGGACTGCAGAGTTCAAGAACAGGACCAATGGAAAGATACAAGTCCACTAGGATGGGTAGTCCCTGCTATCTAGCCTGAGGGGTCAGAGTCCAGCAGTCTTGACAAAGCGGAAGAGCCAGCCTGGCTGGACCAGAGAGAGCAAAGACCTAGGACATAGCAGCCACAGCTGTGAGGAACCTGGGGGGAGGGTGCTACAAACAGATTTGGGGTATGGCAGCTTCTCCCCATCCACTGATCCCCAAATCATTTATATTTACTCTCTTCTTCCAAAACCAAGTACTCAGCCGAGTGCGGTGGCTCATGCCTGTAATCCCAGGCACTTTGGGAGGCCAAGGCGGGCAGATTGCTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAACAAAGTGAGACCCTGTCTCTACAAAAAATACAAAAATTAGCCCGGTGTGGTGGCGTGCACCTGTAGTCCCAGCTACCTGGGAGGGTGAGGTGGGAGGACTGCTTGAGCCCAGGAGATTGGGGCTGCAGGTGATCTGTGATTGTGTCACCACACTCCAGCCTGGGTGACAGAGCAGGAGGACCCTGTCTCAACCTCCCCGCCAAAACAAAAAGAACCCCCAAACCAAAACCAAACACTTCACTACCCTGCCTCAGGGAGTGGGGAAGGCTTCCAGGAACCTTAAGGAGAGAATGCCCAGGGTGGGAGGCAAATCTATTGACAAGTTAGAGACTGGAGCATCAGACCCCCCTGAGGTTGAAATCCATCTATAGGTGTTTACTAAGAAGCTGTTTAATTCAGGGCTCTCTGTGGGAGTCAATAAAATGTTCCCTAGGGCAACTCCACCTTAGCAGAGCAGCCTAAGTATTAAAGGAAACCCACAGGTCTCACCTCTACCCTGTCTACCTCTTGGTGCTTAGAGGAGCAGAGATGAAGGCAGGGAGATGATGTTTTATAGCAACTTTAATTAGGGACTCTTAACTGAGTGTGCCTTGAGGGTATTTAGCTTGCCTTAAACAGTATCATTATCATCTTAGTGCTGGGAACAAAGGTCATTTCAGTGAATTCCTTCATCTTATGGCTGAAGACACCCAAGGCTTAGAAAGGTAGTGACTCCAGTTGTGATTTCTTAGCCAAGAGTAAAAAGGTAAAATTGTGCTATCTAATCTTCTGGATCATTCACAGGATGACAGAAGCTGGTACAAGTTGTTTATACAAATATTTTTTGACTCAAAAAGCTAGGCAAAATTTAGTTCTGAATTTGATCTTTGGCCTTCCTAGTGTCTTCTTTTGGAATCCTTCCCCCGACCTCAGTTGTACCTTCTGCCGCTACCCTCCCGCTCTAAGCAAAACCTGCTCCTACAAAATAATCTGACACATTCACAGAAGAATATAAAAAACTGATGAGGATTAACAAGTTGTCTTTTCTTTTCTTTTTTTGAGACAGAGTCTCACTCTGTTGCCCAAGCTGGAGTGCAGTGCCATCATCTTGGCTCACTGCAGCCTCCGCCTCCCAGGTTCAAGCTATTCTCCTGCCTCAGGCTCCCGAGTAGCTGAGAATACAGGTTCCCACCATCATGCCTGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCATGACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTATGAGCCACTACGCCTGGCCAACAAGTTGCCTTTTAACTGGGAACCAAACCTGTAAGCCAAGAGTGATGAAGCTATCCATAATGGTAAAACTGTGGCCAACTGCAAGTGTTAATAGTTTACCTTGCAGGTCTGGGAGTTGAAAGCTGACAAGAGGGCTTTATAGTATACCTGAAACTCAAGGAATACTCAAGGAAGAAAGTCAGTATGGTGCAGTGGAACATATGTTGTAATCAAGTGACCTTGACTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCCCGCTCTGTTGCCCAGGCTGGAGGTGCAGTGGTGCGATCTCGCTCACTGCAATCTCCGCCTCCCAAGTTGAAGCAATTCTCCTGCCTCAGCCTCCGGAGTAGCTGGGATTACAGGCGCCTGCCACCACACCAAGCTAATTTTTGTGTTTTTAGTGGAGACAGGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCACTCGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGTGTGAGCCAACGCGCCCGGCCTGACTTTCTTAAACTTTAGCTGCATCATGTGAAAATGAGAACATTCAAATCCGCCTCAGTTCCTTTCTAAGTGCCACAGCAGTATATGGAAATTAGATTCCTGCTTTGCTCCATCCATTAGGGCTGGATTGGGCCCTACTTCCCTTGCAGGCAGTCTGTTAACTTGAGCCAAAGCAAAGTAGGGCCCAGGAGGGAGACTTCTCCTGAGGGTGACAGGCTTTTGCTAGAAGAGTTGTATGTCCTGTGACAGCAATAAAATCTTTTTTTTGAGACAGGGTCTTTCTTGTTCTCTCACTCAGGCTGGAGTACAATGGCACTATCTTGGCTTACTGCAACCTCTGCCACCTGGGCTCAAGTGATCCTGCCACCTCAGCCTCCTCAGTAACTGGGACTATAGGCGTGCACCACCATGCCTGGCTAACTTTTGTATTTTTTTGGTAGAGATGGGGTTTCACCATGTTGCCCAGGCTGGTCTTGAACTCCTGAACTCAAGCAATCTGCCTGACTTGGCCTCCCAAAATACTGGAATTACAGACGTGAGCCACCACACCTGGCCCTAATAAAATCTCATTTACCCAGACTTGAGCAGATACCCTTATAGGGCTCATCTGCTTACTTTGTGGGCAGCTTGGATTCACTGTTTAAGTGGAGGTAAATGAACAACATACTTTGTTTTGTTTTTTTTTTGAGATGGAAAACTGTTGCCCAGGTTGGAGTACAGTGGCACAATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCGTGTGCCACCATACCTGCCTAATTTGTTTTCAGTATACTTTCATATGTAGTATTATTTTCATTTTCATAAAAGCAAGTGAAAATTTGCCTTTAAGAAATGTTTCTGGCTGGGGGTGGTGGCTCATGCTTATAATCCCAGCACTTTGGGAGGCCAAGACGGGTGGACTGTTTGAGCTCAGGGGTTCCAGACCTGCCTGGGCAACATGGTGAAACTTGATCTCTACAAAAAATACAAAAATTAGCCAGGTGTGGTGGTGCATGCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATTGCTTGAGTCCAGGAGGTTGAGGCTGGAGTGAGCTGAGATTGTGCCACTGCACTCCAGCCTGTGTGACAGAGCAAGACCGTTTCAAAAAACAAAACAACAAAAAACAATGGCCAGGCATGGTGGCTCATGCCTGTAATCCCAGCATTTTGGGAGGTCAAGGCGGGCAGATCACTTGAGGCCAGGAGTTCGAGACCAGCCTGGCCAACAAGGCAAAACCTCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGCCAGGTGCCTGTAGTCCTAGCTACTCAGGAGGCTGAGGCAGAGTTATTTGAATCTGGGAGGTGGAGGTTGCAGTGAGCCGAGATCGTGCGCCACTGCTCTCCAGCCTGGGGAACACAGTAAGACACTGTCTTAAAAAAAAAAAAAAGTTCCCCATTTAATAGAGAGGAAACTAAGGCTTGGAAAGAGGAGTCCTAATTCTTATTTGGGCTAATGTGAACTTGACCCTTGTACAAAGAAAATCTCAATCTACCACACTACTATCTTTTTCATTGTTAAAAATTCAGGGATCAGGCCAGGTGTGCTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGTAGGGTGGATCACTTGAGGTCAGGAGTTCGAGACTAGCCTGGCCAACATGGTAAAATCCCGTCTCTACTAAAAACACAAAAGTTACCAGGGCATGGTGGCGCATGCCTCTAATCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAAACCAGGAGGCGGAGGTTGCAGTGAATTGAGTTCATGCCACTACACTCCAGCCTGGGCAACAGAACAAGACATGGTCTGGAAAAAAAAAAAAATCAGGGATAAACCTCTGGAATACCAAAATACCATACTCTCCTCCTCTCCATCCCTTTCCTGGCTCTCCTGACACTGCTTCTGTTTACTCTTCATTTATTTGATTATATACCACATCTATGACTCATCAGAGCAAACGGTGCCTGAGGGTGAGGGAGGAAGGAAGGATATGTGACCTTTGCCCTCTGGTCCCTCTCTTCTTCTAG
Seq C2 exon
GAACACCTGTCCATTGAAGATTTCACTCAGGCCTTTGGGATGACTCCAGCTGCCTTCTCTGCTCTGCCTCGATGGAAGCAACAAAACCTCAAGAAAGAAAAAGGACTATTTTGAGAAGAGTAGCTGTGGTTGTAAAGCAGTACCCTACCCTGATTGTAGGGTCTCATTTTCTCACCGATATTAGTCCTACACCAATTGAAGTGAAATTTTGCAGATGTGCCTATGAGCACAAACTTCTGTGGCAAATGCCAGTTTTGTTTAATAATGTACCTATTCCTTCAGAAAGATGATACCCCAAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127831-VIL1:NM_007127:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.319 A=NA C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0220914=VHP=WD(100=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)