MmuINT0172926 @ mm9
Intron Retention
Gene
ENSMUSG00000026175 | Vil1
Description
villin 1 [Source:MGI Symbol;Acc:MGI:98930]
Coordinates
chr1:74478865-74482134:+
Coord C1 exon
chr1:74478865-74479005
Coord A exon
chr1:74479006-74481451
Coord C2 exon
chr1:74481452-74482134
Length
2446 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TGCCCTCTGGTCTCTTCTAGGAG
3' ss Score
11.93
Exon sequences
Seq C1 exon
GAGGTTATGAGCCCGAAAGTGGACGTTTTCACTGCCAATACCAGTCTGAGTTCTGGGCCCCTGCCCACCTTCCCCCTGGAGCAGCTGGTAAACAAGTCTGTAGAGGATCTCCCTGAGGGTGTGGACCCCAGCAGGAAGGAG
Seq A exon
GTGAGTCAGGGACACAAGCAGGACAAGGTCTGGTCCATGTTATTAGAAAACCTAATAACCTCAGACTGTGCCCTGCCCGCAGAGGACTGAGTGCCTGGGAGTCCTTGGTGAACCAAACACCTTCATGGGGGTCCTATATCCCTGGGAGCAGGGCATAGAAGTCCAATCACACTGCTCATTGTGTTGTGGGAGTGTGTGTGGACTCAGATTTATTTAAAATCAGTTGTCAGTAGCTGATTTTTTTAAAAATAGACATTTTATAACCTAGGCTGGCTTCAAACTTAAGAGACCCATCTGCTTCTGCCTCCCAAGTGCTGGGATAAATTTTTCTTTTTTGATTCTTAATTTTTTTAAAAGACATTTATGAGTATTTTGTCTACATGTTTGTATGTGCACCATATCCATGCTGTCTACAGAGGCCAGAAAAAGGCACCAAATCCCCTGTAATGAGTGACAGATGGTGTGAGCCATCATCATGTAGATGCTGGGAACTGCTTGCGTCCTTTCTAAGAGCAGCAACTGCTCTTAACCTCTGAGCCATCCTCCCAGTCCTTGACTTTTTTTTAAAATTTATTTTATATGAATATGAGGGCATCAGATTCAGAGGGTTGTGAGCCACCATGTGGTTGCAGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATTTCTCCAGCCTGACTTATTTATTATTATTTTAAATCATGGATATATTATAAGCATAATGTGAGAAAGCTTGAGTTTAGTGCCAAATGGGGAGAGGAAGATTTCAGACATTTTTGGCTCCCTCAAACTCTAAAGGTGAGCTATTATTAACAAGAGTGGAATGACGGCTCTTGATGGCGGCGGCGGCAGCAGGAGGGTATGGCAGTGCTGATGAATCAGCCTCTGGGAGGTAGATATGAGCATGGGCAGGGCTGGTAATCAGCTGGCAGGCCTGCAGAGCCCAAGAGCAGGGCCGTGAAAGATACAAGCTCACTGGGATGGGTAGTCTCTGCCTTCTAGCTGGGGTCAGAGTCCAGCAGTCTGGACACAGTTGAGAGGTCAGCCTTACTGGGCCCAGGGGATGGCAGTGGGGGTGACGACAGGTATGGGTACCATGGATCCATGTACAGAGCTTAGTCTGTCATTGGAGCTATAATTGTGACAAATATAGGGTTCCAGTAACAGACGTGGTACCCAGTTCCAACCCACTGATATCCTTATTTACGGCATTTCCAAACTGCCCTCCCAGGAGACTTGAGGAGAAAAGGCCCATGCCTGGGAGGCAAGTCTAATGACAGGGTAGGGAACTGAAATGTCATACCCACCTGAGCTTGAAACCCATCTAACAGTGTAGCTTAAGAAGCTGCTCAATAGCCGGGCAGTGGTGCCGCACGCCTTTAATCTCAGCACTTGGAAGGCAGAGGCAGGCGGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAAACAAAAAACCAAAACCAAACCAAACCAAAAAAACAACAAAAAAAGAAGCTGCACAATGTAGCCGCTCTAGGAGCAGAGAAATGTCCCCTGGGGCAACTCCACTTCAGAACAGCCTGATTTAAACTGGGCTTTGCACATAGTAGGCAGGCAGGTGCTGGTGCACTGAGCTCTCCTACCTGTATCTTCCAAGTTCTGAGTTACAGGAGTGCGCCACCAAGCCATTTTCTCCAGCCTTTGAAATCTTATTATTTATGGGTATTTTGCTTGAATATGTGTACCATGCCCATGAAGTACTCCTGGAGGCCAGAAAAACCAAAAAATAAAACCCCCCAACAAACAAAAATCAACAAAAAGAAACATCCCTGAGCTGTGTGGTAGTGTACACCTTTAATCTCAAGTACTCAGAAGGCAGATGCAAATTCATCTCTAAGAGTTCAAGGCTAGCCTGGTCTACGAAATGAATTCTGGGCAAGCCAAGGCTACACAAAGATAGCCTGTTTTAGAAACAGTTCCCATTTTGGGCTAAGAATATAGCTTGAGTTTGAACTGTGCAGCATAAAAACTGCCTGGAGGAACATGCCTGTGATGTTAGCAAGTGGGAGGTAGTAACAAGAGGTTCAAGAGTTCAAGTTCCAGCCTGGGTCCCGGGAAAACCTAAACTCCTACTTCCTAAGAGTAGGAGCCTGGAAATAACAGAAGTTCCTTAAACAAGCCAAGATCTGAGATTTGACTTCAAGCCTAACGTGGCCTGACTGACTACACGGACATTTATTCATGTCACACTTCCTCCTCCTCCCCTTCCCTGGCTCATGACAATGTTGGCTTTTGTTCCTCTTCTGTTTGATCATATGCCACATCTGTATGATTCATCTTGAGCAAACCCAGGGGAAGACTGTGACCTTTGCCCTCTGGTCTCTTCTAG
Seq C2 exon
GAGCACCTGTCCACCGAAGACTTCACTAGGGCCTTGGGCATGACTCCAGCTGCCTTCTCTGCCCTGCCTCGATGGAAGCAACAAAACATCAAGAAAGAAAAAGGACTGTTTTGAGAATTGAAGCTCTCTGGCTGTCCAGCAGCCCCTACCCTGCCTTCAAGGGCTTTGTGCCGCCATTACTGGTTTTAGTCCTGTGGCAGATGAAAATGTCCAATTGTACCTGTGAGCCACAGTGTGACAATTCCTTTTGTTTATAATAGTAATTTGCCCATTCCTTCAGACGCATGCCACAGACCCATGGAAATCTTGTAGAGTTTTCTTTTCTTAGATGGACAGCTAAGTACTCCAGGAGACATTAGCGTCTGGGGGTTTCTCTGGCACCGTCACTCACTCAGGATCTTATCCTGATCTTACCCTCCTCACACTCAAAAGGGAGGGCTAAGGCCAAAGCTGGGCTTACAGCTCTAACCCAGAGCCTTTGCAAAGCTCCACAGACTCCTCAAATGACAACACCAGGAACATGGGTTTGCTACGTGAAGTCCAATCAGAAGCCAATAGGTGATTTTCTCTTAAAACTGGTTATCCAGTGTCCCCAGGAACATGTCCCTTTAAACAAATAAATCAAACTAATATGAGGTTAATAAAGGCTTTAATGTCTCTCACACATTAAAACAAAACAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026175-Vil1:NM_009509:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=NA C2=0.216
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0220914=VHP=WD(100=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: