RnoINT0162862 @ rn6
Intron Retention
Gene
ENSRNOG00000015408 | Vil1
Description
villin 1 [Source:RGD Symbol;Acc:1307048]
Coordinates
chr9:81712073-81717621:+
Coord C1 exon
chr9:81712073-81712213
Coord A exon
chr9:81712214-81716880
Coord C2 exon
chr9:81716881-81717621
Length
4667 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GCCCTCTGATTCTCTCCTAGGAG
3' ss Score
9.39
Exon sequences
Seq C1 exon
GAGGTTATGAGCCCCAAAGTGGATGTTTTCACTGCCAATACCAGCTTCAGTTCTGGGCCCTTGCCCATCTATCCCCTGGAGCAGCTGGTAAACAAGCCTGTGGAGGAGCTCCCTGAGGGTGTGGACCCCACCAGGAAGGAG
Seq A exon
GTAAGTTGGGTACACCCCGCAGCACAAGGACCAGTCCATTTTATTGGAAAACCTAATTGACCTCAGAGTATCTGAGGTCCTCAGACAGCTGGGTACTGGAGACTCCTTGGTGAACAAAACACTTGCGTGGGCATTTATATCCCTGGGAGCAGGGCATAGAAGTCCAATTACACTGCTCATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAGGAGGAGCCTTGTGAGTTAGAGATTGTTTTCTGAAAGTTTATAGGAACCCCAGTTATGGGAACAAAGTGAGTTTTTCTTGGAGAAGCAGCAGTAAGATAAAAGGCAAGAGGTTCAGGGAGTGAGCACAGGAGTTAGGGACAGACACTGGTGAGACAAGCTAAGCTGGGCGGGCCTTTGGGGACCTATTGTGGCTGAAGCAGCGAAAACTTAGATATTCATCTCTTGAAGCTTAAGTTGAATTTTCTTTGTTAGAGATAGAGTCTCCTTTTGTAGCCCTGGCTGAATCGGAACTTGCTACGTAGACTAAGCTGGCCTTGAACTTGCAGTAATCCTCCTATTTCTGCCTATAACATGTGTTATTACATCTATTTTAAATTTAATTTAATTTTATGTGCATTGGTGCTTTGCCTGCATTTATGTCTGTGGAAAGGTTGTCAGAGCCCCTGGAGCTGGAGTTACAGACGGTTGTGAGTGGCCACATGGCTGCTGGGAATCAAACCCAGGTCCTCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGTCCCTTGCTTTTGTTATTTTATTTTTGTTTCTTTGAGACAGGGTCTCTCTATGCCCTGGAACTAATTATGTAGACCAGGCTGGCCTGAAAGTAAGAGAAATTTCCTGACTCTACTTCTTGGGCACTGGGATTAAAGGTGTGCGCCACCATGCCTGGTTTTATTACTTAAAATAGTTTTATTTTTAATTATTTCTATGAGTGTGTGTGCATGTGTGCAAATAGGTGCAGGCACCCGTGGAGGCTAGAGGCATTGGATCTCCTGGCGTTGGAGTTCCAGGTGATTGTGAGCTGCCCAGTGTAACACCTAGGAATTGAATCTGGTTCTCTGCAAAGGCAGTCAGTGCTCTTAACACTGAGCCATCTCTCCAGCCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTCTTTTACTTTTTCTTATTTTGAGGCAGGGTCTCTACTAGTCCTCTTTTTTTCGTTCCCCAAGTACTGAGATGAAAGGCTATTGCTATTACGTCAGGACTGAGGCTTCCACTTTTAAAAGCTCCTTTGGCTGCACAGTGAAAAATAAGATTAACAGATGGCAAAGAGCAGCCAGGAGACCCATTAGGAGACTCATTGCTAGGATGGAGAACAGTGAGCCTAAAGTATGTGGTGGCTAAAGTAGAGGGCTCTGCAAGCTTGGAGGAGCATCGGTGCATTCATACATTACTGGATTAGGACTATGAAGGAGGGAAATTTGTGTCATTCCCAAGATAGAAACCCTGAACCAAACTAAGCTCAGTGTTTCTCTGTCATTTGAAGCAATAGTTCTCAACCTTCCTAACACTGTGACCCCTTAACACAGTTCCTTATGTTGGGGTGATCCCCAACCATAAAATGATTTCATCACTACTTCCTCGATGTAAATTTGATGTTATGAATGAAAATGTAAATATCTGTTATGCAATCCCTTCGAAAGGACCAGCTAGTCTGGTGTGCACAGCAGTGAACAGTATGAGAACCTGTTTCCAACAAGGTGGAAGGTTAAGGCTGACACCCGAGGTTGTCCTGTCACACACACTTTCGCAGGTGTATACTTGTGCCCACACACATCATCCATATAAAACCACATTTTGAGCTGGGCATGGTGGCTTATTCCTGTAATTCAAGTACTTAGGAGGCAGAGACAGGAGGATCATCCTAAGTTTGATGTCATGCCCTTCCTGTCTTTTGCCTCAAAGGGCACCATCATGCACTGTCCCCTGGCTACTCCCATCATTCACTGTCCCCTGGCTACTCCCATCATTCACTGTCCCCTGGCTACTCCCATCATTCACTGTCCCCTGGCTACTCCCATCATTCACTGTCTCCTGGCTACTCCCATCATGCACTGTCTCCTGGCTACTCCCATCATGCACTGTCCCCTGGCTTCTCCCATCATGCACTGTCCCCTGGCTTCTCCCATCATGCACTGTCTCCTGGCTTCTCCCACCATGCACTGTCCCCTGGCTACTCCCATCATGCACTGTCCCCTGGCTTCTCCCATCATGCACTGTCCCCTGGCTTCTCCCACCATGCACTGTCCCCTGGCTACTCCCATCATGCACTGTCCCCTGGCTACTCCCATCATGCACTGTCCCCTGCCTTCTCCCATCATGCACTGTCCCCTGGCTTCTCCCACCATTCACTGTCCCCTGGCTTCTCCCATCATGCACTGTCCCCTGGCTTTTCCCTGTGGGTCTAGAAAGCAAGGCACCTATGTCCTTACTGTAGCTCTATGATGCTCAGTAGACCCAGAAGCTTGTTTCATGCTCTGGTATACAGAAAAGTTTTCAAACTATGGGGCATGGTGACACACACTCAGCCCTTGGGAAGCTGAGGCAGGAGGATCATTTCTAGTTTGAACCTAGCCTGAGCTACTTAGTGAATTCAAGATCAGCTTGGGCTATACCCAGACTCAAATTTTTACCATCCCATTCTACACGCAAGAAAACCATTAACCTAGGGCTGGGAAGATGGCTCAGACTCTTAAGTGCTTGCTGCGAACTCTGAAACCCTGAGCTTCACCTCTATCTTTTTTTTTTTTTTGGTTCTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCACTCTACTACTGAGCTAAATCCCTAACCCTTCACCTCTATCTTATAAGTATTTTGTCTACATGTTTGTATGTGTACCACATCTACAGAGGTCAGAAAAATGCACCAAATCCCCTGTAAATGAGTTACAGATGGTTGTGAGCCTTCATGTGGCTGCTGGAACTGAACTTGTGTTCTCTGCAAGAGCAGCAATAATCTTAACCTCTGAGCCATCCACCAAGCCCATGGTTTTATTTTTTCAATCATGGATATTATATGCATCCTGTGAGAAAGATGAGTTCAGCGCCAAATGGGCATTCTAAGATTTCAGACATTTTTGGCTCCCTCAAACTCTACAGGTGAGCTATTATTGACAAGAACAGAATGGTGGGTCTTGGCGGCCGCAACAGGGTAGGTAGGTAGTGTTGGTGAGTCAACCTCTGGGAGGCAGATATGAGCATGGGTGAGGCTGGTAATCAGCTGGCAGGCCTGCAGGGCTTAAGAGCAGGGCAATGAAAGATACAGGTTCACTTCGATGGGCAGTCTCTGCCCTCCAGCTGGGGTCAGAGTCTAGCAGTCTGGACACAGTTGAGAAGTCAGCCTTCCTGGGCCCAGGGGCTGGCGGTTGGGGTGAGGATAGGTATGGGTGTCATGGATCCATGTGCAGAGCTTAGTCGGTCACAGCAGCCACAGTTGTGACATATAGGGTTCTAGTAACAGACTTGGTACTGATATATCCTCATTTACGCCATTCCCAAACTGCCCTTGCGGAGCAACGGCCCAGGGCTGGGAGACAAGTCTAATGGCAGGGTAGGGAACTGGAATGCCATACCCACCTGATCTTGAAACCCATCTAGTGTTTGTTACGAAGCTGCTCAATGCAGCCACTCTAGAAGTAGAGAAATGTCCCCTGGTGCAACTCCGCTTCAGAACAGCCTAAGACTGAAACTAGGCTTTCCACATAGTTGGCAGGCAGGTGGGGAAGCACTGAGCTCTCCTGCCTATCTTCCAAGTTCTGAGTTAGAGAAGTATGCCACCATATCCTTTTCCCCAGCCTTTGAACCTTATTTCTTAGTTTCATGTGTATGGGTGTTTTGCTTAAATGTATGTGTACCATGTGCATATGGTACTCCCGGGGGCCAGAAAATCCAAAAACTAAAACCAAACCAACCAAAAACCCCCAACAAACAAAAATCAAGAAAAAGAAACATGCCTGAGCCAAGTGTGGTGGTGTAATCTCTTTTAATCTCAAGTACTCAGAAGGTAGAAGCAAATTCATCTCTAAGAGTTCAAGGCCAGCCTGGAATATAAAACGAGTTCTGGGCAAGCCAAGGCTACACAATGATATCCTAGCTCAAAGAAAGCAGCAGCTTACATTTTGGGCTAAGAATATGGCCTGGGTTTGAACTGTGTAGCATAAAAACCATGCCTGGCAGAACATGACTGTGATCTTAGCAACTGGGAGGTGGGAATGGGAGGTCCAGGAGCTCAAGGCCTAGCCTGGGTTCCAGGCCCACCTAAACTCCTACTTCATAGAGGAGTCTGGAAAGAACAGAAGTTCCTTACACAAGCCAAGATCTGAGATTTGACCTCAAGCCTACCATGGCAGTAGGCTGATTGACTACATGGACGTTTATTCATGTTACATTTCCTCCTCCTCCCATCCCCTGGCTCCTGATGGTCTCAGTTTTTGTTTTTCCTCCGTTTGATCATATACCACATCTGTATGACTCATCTTGAGCAAACCCAGGGGAAGACTGCTATGACCTCTGCCCTCTGATTCTCTCCTAG
Seq C2 exon
GAGCACCTGTCCACTGAAGATTTCACTAAGGCTTTGGGGATGACTCCAGCTGCCTTCTCTGCGCTGCCTCGATGGAAGCAACAAAACCTCAAGAAGGAGAAAGGACTGTTTTGAGAACTGAAGCTCAGCGTCCAGCAGCTCCTACCCTGCCTTCAAGCCTCCTCCCCACCCCCCATTACTGGCTTTAGTCCTGTGCCAGTTGAAAATGTCCAATTGTATCTGTGAACCACAGTGTGAAAGTTCCTTCTGTTTATAATAGTAATCTGCCCATTCCTTTAGAAATATGCCACAGCCCAGTGGAGTCTTGTTCTAGAGTTTTCCTTCCTTAGAGCAGCTGAGTACTCCAGGAGACATAGCACCTGGGCTTTTCTCTCAGCTTATCCCTCACAGCAGGGAGTTGGGGAGTGTTTGGCAGTTTGAAGTCATTCCCACAGAGAGGTCTTTCCTCATTGCTGAGGGACCTGTTTTTTGAAAGCTAAAGCCTACAAGGAAGTACTGAGAATCAGGTGTTGTCTCATCCTCTTTCATACTCAAAAGGGGAAGCTAAGGCCAAGGCTGGGCTTACAAGCTGTAACTCAGAAGCCTTTGTAAAGCTTCACAGACTCCTCAAATGACAACACCAGGATCATGGGTTTGCTACATGAAGTCCAATCAGAAGCCGACAGAAGGTGATTTTCTCTTAAAACAACTGGTTATCCAGTGTCCCCAGGAACATGTCCCTTTAAATAAATAAGTCAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015408:ENSRNOT00000021432:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.298 A=NA C2=0.216
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0220914=VHP=WD(100=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]