DreINT0036229 @ danRer10
Intron Retention
Gene
ENSDARG00000059342 | avil
Description
advillin [Source:ZFIN;Acc:ZDB-GENE-060421-6683]
Coordinates
chr11:206957-208742:-
Coord C1 exon
chr11:208635-208742
Coord A exon
chr11:207229-208634
Coord C2 exon
chr11:206957-207228
Length
1406 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAC
5' ss Score
4.07
3' ss Seq
TGTTATTATTGGTCTTCCAGAAG
3' ss Score
7.42
Exon sequences
Seq C1 exon
ATCTCCGATGCTCCAGAGAATAACATCATCTCTGAGTATCCAGCGGCGCTGCTGGTGAACAAGAGCACTGAAGATCTGCCCAAAGATGTGGATCCAGCACAGAGAGAG
Seq A exon
GTGAACCACACACACACACACACACACACACACACACACTCATGCTGTCTGTGCACTGAGACACACGCTGCTCTTACTCTGAGGTGTAGTCTTGCTTCCAGTCCAAACAATTCTCTCATCAAGCAGCATTTTCTAGAGGAGTGAAGCATATAGTGTTGTTTTCAGAAGTGATGAGTCCAAATGAAGAGAGTTTCTCATTAAAACAAGCAGAGTAATGGAATGCATAAGTCTATAATTGCACACGCTCTGCCTGTACTGAGTCCTCCATACTGATTCACTGCACAGTTCCATGTAAACCGCTCAAGGAGACCAGGACAATATGTGCCAGTTTTGCCTTGGAAATATATGCAGGAGTGTGTCATGAGTCATTTGAGGAAACGCGCTGTTCATGAGACCAGTTTGATTGTTTTACGAGTGTGTAATGTGTCTATATAAGTAGAGCTACAGCCTTCATGAAAAACACTACAGAGTACCTGACAGGACACACTGCAGTGGTGTTCAGCCACACTACAGCAAACAGCCTGAATTACTCTGCTGTGGTGATTCTACAGTCGCTATGGTAACACAACAACAGTAATTAATCTGCTGTGGTGATTCTACAGTTGCTATGGTAACACAACAACTACAGTAATTGATCTGCTGTGGTGATTCTACAGTTGCTATGGTAACACAACAGCAACAGTAATTAATCTGCTGTGGTGATTCTACAGTTGCTATGGTAACACAACAGCAACAGTAATTAATCTGCTGTGGTGATTCTACAGTCGCTATGGTAACACAACAACAACAGTAATTAATCTGCTGTGGTGATTCTACAGTCGCTATGGTAACACAACAGCAACAGTAATTAATCTGCTGTGGTGATTCTACAGTTGCTATGGTAACACAGCAACTACAGTAATTGATCTGCTGTGGTGATTCTACAGTTGCTATGGTAACACAACAGCAACAGTAATTGATCTGCTTTGTTGATTCCACAGTCGCTATGGTAACACACAAATATAGTGTAATATGCTAAAATAAACCACAGTTTACTGTAGTAAAATCTAAACTGTACTACAGTATTTATTACATTCTATTACGATTACTCATTTAGCAGATGCTTTTATCCAAGAGTACACCTTCCTAAAGTAATGTTCAAAAACAGCAGAGTATTTTAATAAATCTGACGATGGTCTTCAGTGTGGTGTGTGTGTGTGTGAGTGTGTGTGTGTTCAGATAAGCAGTAAATTCCTGACATTATAGACGCTGCTGTTCATGATGCACTCGCGTGTCCGCCATACGCAGCTGATTTGACTACAGCATTTGAATAAATGTGTGATGATACATGTTTGTTCCACTCATTATATTATTCCCACCAGCTCATGCAAACATTGTCCTCATTATTGTTATTATTGGTCTTCCAG
Seq C2 exon
AAGCACCTCTCGGAGGCAGATTTCCAGGCAGTGTTCGGGATCTCTAAGGAGGCGTTCAGCTGTTTGCCGCAGTGGAAGCAGGCCCGGATGAAGAAGCAGAAAGGCTTGTTCTGAAACTCAGATATAGGCAGATGGAGATGTTCATCATTTACTCTCACTAATTCAATGAGGAGTTTTTAACCTTTCATCATCATTGTACAAGTGTGGATGTGTTACACTGTACGTTTTTTGTGGGACTTTTTAAGGGAAAAAATAAAAAAGTTTGTATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059342:ENSDART00000104546:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0220914=VHP=WD(100=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCGATGCTCCAGAGAAT
R:
TTCCCTTAAAAAGTCCCACAAAAA
Band lengths:
357-1763
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]